PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4DS_38EA63379.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 912aa MW: 100096 Da PI: 5.3948 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.9 | 4.9e-29 | 558 | 608 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Traes_4DS_38EA63379.2 558 EKHVSLKVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 608 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.995 | 547 | 628 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-25 | 561 | 608 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.98E-21 | 807 | 897 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 4.3E-21 | 812 | 893 | No hit | No description |
SMART | SM00666 | 2.5E-21 | 814 | 896 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 22.536 | 814 | 896 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.0E-16 | 815 | 895 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 912 aa Download sequence Send to blast |
MDENGTPDYS DGGSDMDLLM LSGFDDLDSF PELGAGPSFS DGILSSFSVS PAQQVTHISP 60 SQPSVDAEEQ GDVSITDGSD CSVSLASKEV MNVSASTVPK TVYGGVTLTE RMLRALAMLK 120 EASTAGPVLV QVWIPVRNGD HQVLTTSDQP FLLDERLTGY REVSRQFTFS ATEGPGLFPG 180 LPGRVFISGM PEWTSNVMYY NTSEFLRVDY AIRNEVRGSL AMPVFNSSGG SCCAVLEVVM 240 TQEKDNFCSE MDNLSNALQS VQLSTVRART HPQSLTRNQQ SVLTEILDVL QGVCHTHMLP 300 LALAWIPVCP NSSLNVSAEY GDQAIKFGLR KKDVLCVQES ACYINDMRMH DFLRACAEHP 360 LEKGQGVAGN AILSNHPFFS SDVREYDMHD YPLAHHARKF GLHAAVAIRL RSTYTGDDDY 420 VLEFFLPLTC KVREEQQLLL DDISITMQRV CSSLRTVSDA ELKENTTTMR SEIRCSSSDV 480 SISSCNQIDV SSEVKINVLL ENQIRNSVEQ LADKKYAKFE PGTTSQNFEN CSSTGKNVSL 540 TVLQESTSDG LKIRSSTEKH VSLKVLQQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW 600 PSRKIKKVNR SLEKIQNVIS TVHGVDGVIK YDPATGCIVS SVSHTEEPPI MNVEHRSSDS 660 LPTECRKFQP DYDAYQREHL GQAVPHKAQN EKRSETHINL NPGGLSRNSH FGRTSKGSEC 720 QDASNGSYLT KEMICPGGME MWVEGAEQKN VLWNSVSMPQ QCKIEIETDK SNAIVEQSLA 780 SSSSMTDCSS GGTSSDGTLK KCLKSRPVDG SNASIVVKAA YKDDTVRLKL LPSMKYQDLL 840 EEIAKRLKLS VGAFQLKYKD DEDEWVILAS DADLQECLDV LDTTGARIMK VQVRDVPCAT 900 GASSGSSFIS GR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK249277 | 0.0 | AK249277.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152944.1 | 0.0 | protein NLP2-like | ||||
TrEMBL | A0A3B6JH76 | 0.0 | A0A3B6JH76_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453HG20 | 0.0 | A0A453HG20_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_38EA63379.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-178 | Nin-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|