PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_2CE9E3235.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 679aa    MW: 72229.7 Da    PI: 6.404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_2CE9E3235.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.14.9e-1263086722374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfse 86 
                             +lLl+cAe v+s+dl +aq++L ++ ela+p g+++qR+aayf+eA++arl++s+ +ly+ lp  +++  +    s+++aa+++f+ 
  Traes_4DS_2CE9E3235.1 308 LTLLLQCAESVNSDDLDEAQRALLEIAELATPFGTSTQRVAAYFAEAMSARLVSSCLGLYAPLPNASSPAASrlvNSRVAAAFQVFNG 395
                            579************************************************************77666655568788899999***** PP

                   GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                            +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s e+le+tg+rL++fA++lg+
  Traes_4DS_2CE9E3235.1 396 ISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFAHTLGL 479
                            ***************************************************************....********************* PP

                   GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                            pfef + va +  +l++e+L v++  +Ea+aV++ +  h+l+d +++ ++    +L+l+++l Pkvv++veq+++h s+sFl+rf+ea
  Traes_4DS_2CE9E3235.1 480 PFEFYP-VAGKAGNLDPEKLGVDTrrREAVAVHWLH--HSLYDVTGNDSN----TLNLIQRLAPKVVTMVEQDLSH-SGSFLARFVEA 559
                            ******.799**********999888*********9..999988888888....**********************.899******** PP

                   GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                            ++yysalfdsl+a+++++s+er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF++++l  +aa+qa+lll +++sdg
  Traes_4DS_2CE9E3235.1 560 IHYYSALFDSLDASYSEDSSERHVVEQQLLAREIRNVLAVGGPARTGDIK-FGNWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDG 646
                            ********************************************999987.************************************* PP

                   GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                            y++ ee+g+l lgWkd  L+++SaWr
  Traes_4DS_2CE9E3235.1 647 YTLVEENGTLKLGWKDLCLLTASAWR 672
                            *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.42281652IPR005202Transcription factor GRAS
PfamPF035141.7E-123308672IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MGSSSLLLFP SSSSSAPNHS SYSHAHAAAS ASHSALLPPL PSPSPSDLFL YLDQLDHQEG  60
GAAMVRKRPA PDVDLPPPRR HVTGDLSDVT AATGGAAPPQ QLPSAVAGSA QLPALPMQLP  120
AFGGHLQAPV PAMDVVVAPQ VATEVNVNNN STAWVDGIIR DIIGSSGAAV SVAQLIHNVR  180
EIIHPCNPGL ASLLELRLRS LLASDLVQHP PPPPPPPHHP PSLLPGAGGN TILSAPPVPA  240
LPPPPPPDKR RREEEQQNPP PQSPKPPPSA EETAAAAAAA AAAASAALKE RKEEQRRRQR  300
DEEGLHLLTL LLQCAESVNS DDLDEAQRAL LEIAELATPF GTSTQRVAAY FAEAMSARLV  360
SSCLGLYAPL PNASSPAASR LVNSRVAAAF QVFNGISPFV KFSHFTANQA IQEAFEREDR  420
VHIVDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFAHTLGLP  480
FEFYPVAGKA GNLDPEKLGV DTRRREAVAV HWLHHSLYDV TGNDSNTLNL IQRLAPKVVT  540
MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSSE RHVVEQQLLA REIRNVLAVG  600
GPARTGDIKF GNWREKLAQS GFRAASLAGS AAAQASLLLG MFPSDGYTLV EENGTLKLGW  660
KDLCLLTASA WRPFQALGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02916733380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}.
UniProtProbable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3663460.0AK366346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042C03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178107.10.0protein SCARECROW 2-like
SwissprotA2ZHL00.0SCR2_ORYSI; Protein SCARECROW 2
SwissprotQ2QYF30.0SCR2_ORYSJ; Protein SCARECROW 2
TrEMBLA0A3B6JIH70.0A0A3B6JIH7_WHEAT; Uncharacterized protein
STRINGTraes_4DS_2CE9E3235.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Kamiya N, et al.
    Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis.
    Plant Cell Physiol., 2003. 44(9): p. 875-83
    [PMID:14519768]
  2. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]
  3. Kaur P, et al.
    Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates.
    Funct. Integr. Genomics, 2008. 8(4): p. 375-86
    [PMID:18543009]
  4. Sazuka T, et al.
    A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos.
    Plant J., 2009. 60(2): p. 227-41
    [PMID:19682283]
  5. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  6. Fan T, et al.
    Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
    PLoS ONE, 2015. 10(5): p. e0125833
    [PMID:26023934]
  7. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  8. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]