PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DS_2A5B4C4C4.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 279aa MW: 31148.5 Da PI: 5.7871

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_2A5B4C4C4.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.3e-17	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W++ ar g++Rt+k+c++rw++yl Traes_4DS_2A5B4C4C4.1 11 RGPWTVDEDLTLINYIADHGEGRWNALARAAGLRRTGKSCRLRWLNYL 58 89********************************************97 PP
2	Myb_DNA-binding	55.8	1.1e-17	64	107	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Traes_4DS_2A5B4C4C4.1 64 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 107 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.404	6	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.92E-30	9	105	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	7.6E-16	11	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	12	65	IPR009057	Homeodomain-like
CDD	cd00167	7.18E-11	13	58	No hit	No description
PROSITE profile	PS51294	23.86	59	113	IPR017930	Myb domain
SMART	SM00717	1.2E-15	63	111	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-16	64	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-24	66	112	IPR009057	Homeodomain-like
CDD	cd00167	1.29E-11	66	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0046686	Biological Process	response to cadmium ion
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
AEPEEEAELR RGPWTVDEDL TLINYIADHG EGRWNALARA AGLRRTGKSC RLRWLNYLRP 60 DVKRGNFTAD EQLLILDLHS RWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ KHAKQLNCDV 120 GSATFKDAMR YLWMPRLVER IHATAAPTGG DPTIGDTSCA SGVTSMATTA ATATTYPENN 180 SPSSAVTTSR SASSGSFTSE LCGEEKNLHV HGSGEKTTSG GDWMQDADQE FWAMHMQIQP 240 DEGGLFHVDH ELSGWVQGFS DVGVSADNLW SLEDIWKMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-25	8	111	1	103	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-25	8	111	24	126	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009018	0.0	BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155473.1	0.0	transcription factor MYB108-like
Swissprot	Q2QZJ8	1e-121	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	A0A3B6JJA5	0.0	A0A3B6JJA5_WHEAT; Uncharacterized protein
STRING	EMT04483	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	9e-70	myb domain protein 78

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]