PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_261E93270.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 415aa MW: 45942.5 Da PI: 8.7525 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.6 | 2.1e-23 | 143 | 187 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++ +k+CErH++r+r+rsrk++e+ Traes_4DS_261E93270.11 143 DPEPGRCRRTDGKKWRCSKEAMAEHKYCERHINRNRHRSRKPVEN 187 79****************************************997 PP | |||||||
2 | QLQ | 56.7 | 7.2e-20 | 84 | 119 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll i+k Traes_4DS_261E93270.11 84 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 119 8******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.1E-11 | 83 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.762 | 84 | 119 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-14 | 84 | 117 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.151 | 143 | 187 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-19 | 144 | 186 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MLPELTAAAM ELGQVLGYTP PATKDARSGG GFAQAAACPY PYPSPFLDEQ KMLSFSKAAA 60 PPSSGMDFGR SNEQRLLLAR SKMPFTPSQW MELEHQALIY KYLNAKAPIP SSLLISISKS 120 FRPSSDRMPW RPVYQGFTNA DSDPEPGRCR RTDGKKWRCS KEAMAEHKYC ERHINRNRHR 180 SRKPVENQTR KNAKETPAAG SLSAAVSQGG CKKAKAGDEL KPGSVSYWTD NLNRAMVSKA 240 RGNNPEEGNS APLLNSTNQQ HTLSLFSQLK QQSKPDKFSP AVDSESISSN TVLKPWERSN 300 QQSSKDVSST TLHDRGCLQS VLQDFSMHKN DKIEAQKNNA SVPSTFYSPT EGQHISCLAS 360 NMMQVQEDCI SSSWEIPQGG PLGEILTNSK NTDDLTNKCE SRSYGWLLSL DEHEM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196595.1 | 0.0 | growth-regulating factor 9-like | ||||
Swissprot | Q9FRG8 | 0.0 | GRF9_ORYSJ; Growth-regulating factor 9 | ||||
TrEMBL | A0A3B6JCP7 | 0.0 | A0A3B6JCP7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_261E93270.11 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13124 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-37 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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