PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_050789E2A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 40aa MW: 4317.86 Da PI: 9.8161 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 31.1 | 3e-10 | 3 | 38 | 20 | 55 |
GRAS 20 aqalLarlselaspdgdpmqRlaayfteALaarlar 55 a++lL ++++++ p+gd++qRla++f+e+L+arla+ Traes_4DS_050789E2A.1 3 ATELLRQIKQHSGPTGDATQRLAHCFAEGLEARLAG 38 899*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.103 | 1 | 40 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-7 | 3 | 38 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 40 aa Download sequence Send to blast |
RGATELLRQI KQHSGPTGDA TQRLAHCFAE GLEARLAGTR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 2e-51 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161472.1 | 1e-18 | scarecrow-like protein 34 | ||||
TrEMBL | A0A446X6V5 | 2e-17 | A0A446X6V5_TRITD; Uncharacterized protein | ||||
STRING | Traes_4DS_050789E2A.1 | 1e-20 | (Triticum aestivum) | ||||
STRING | TRIUR3_06177-P1 | 9e-18 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 4e-15 | GRAS family protein |
Publications ? help Back to Top | |||
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