PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_01780A949.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 917aa    MW: 100950 Da    PI: 7.6979
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_01780A949.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1972.2e-3012117291
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkekd 73 
                            fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+                 +  rrtra+tr+gCka+++vkk++ 
  Traes_4DS_01780A949.1  12 FYNLYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKHeqaaalasspagaddgGRGGRRTRAVTRVGCKAMIRVKKQDG 99 
                            *******************************************9999************9998999********************** PP

                   FAR1  74 gkwevtkleleHnHelap 91 
                            gkw +tkle+ HnH+l+p
  Traes_4DS_01780A949.1 100 GKWAITKLETAHNHPLVP 117
                            ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-2812117IPR004330FAR1 DNA binding domain
PfamPF105511.1E-22247333IPR018289MULE transposase domain
PROSITE profilePS5096610.151509557IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-7527556IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-6532559IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MEFDDEEDAW TFYNLYAHRV GFSTRISVMH RSRRDGSIMS RQFVCAKEGF RTYRGKHEQA  60
AALASSPAGA DDGGRGGRRT RAVTRVGCKA MIRVKKQDGG KWAITKLETA HNHPLVPQNQ  120
AHCLRPHKPL SECGKQRSSS SYGLRRNGGM FLAIEPPPPP TPPTPPVPQT SIIPQPAVVP  180
QYIGDGIGNA TRVILDYVKR MQAEDPAFFY AMQFVEGHPV GNVFWSDARA RTAYKDFGDA  240
VFLDDHCKRS KYELPLVTFT GVNHHCQPVL FGCAVIRDNS EASFAWLFET LLLAMSGQHP  300
VSLTTEYDGA IQSAVHKVLP QTRHRFCRWH ILNEAQCKLS DFLNAFPSFY DDLVNCINMS  360
DTIDEFEANW EALISKVGSG HNEWLDSMYN CRQQWAPVYL RDTFFGDEPS RQGCMSRSSF  420
FESHITAKTN SQSFIQQYEK ALDSCYEREV KEEFETKYSL PDIKTPSPIE KQGADLYTRT  480
LFLRFQQEVI GASVSTLEVA EEDGRACTYK VTTSQGSEKP RMVQFNSSVC SAKCTCQMFE  540
CLGIVCRHIL TVFGAQGVST LPSQYIIKRW TKNATDRSSD KKPDEVIRVK ELKEEQRSTV  600
EDGEQSQTWR YNNLCREALR YAEEGASSAE VYVVAMQALQ EAANKVNMAK RGIGQVAAPL  660
AVMPITAQLP ECSGKIQDSF SQQKKRKRNS NNSRENSTPN QFMHMQQPSN YLFVGPSTSG  720
GSQGPSQLVA AIPVSSCAQH GQTSGAHNST DGNMATASVA VDKFHGFSDR DASTTAPSSG  780
NVVQAGETKS SGAASQINEI HELSQANGNK GSSVNSTASP QLVTVPIGFC LPSMDKNKMS  840
TAGMNSTNSG GMMNNGNASF DLRQCQSSAQ VPATHSEAKT LAENTESRAA TADSSSIRAA  900
AIAAGARIYP HLMQLQS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649320.0AK364932.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2029I24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160726.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453H0V10.0A0A453H0V1_AEGTS; Uncharacterized protein
STRINGTraes_4DS_01780A949.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-160FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]