PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_FD6DBA41D.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 220aa MW: 23887.8 Da PI: 8.2481

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_FD6DBA41D.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.2e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd +l d ++++G g+W+ I+r g R +k+c++rw++yl Traes_4DL_FD6DBA41D.2 14 RGPWSREEDAKLTDHIAKHGLGRWSDIPRLAGIERGGKSCRLRWLNYL 61 89****************************6699********97 PP
2	Myb_DNA-binding	38.1	3.7e-12	71	109	5	45
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++eE++l+++++ G+ W++Ia++++ gRt++ +k++w+ Traes_4DL_FD6DBA41D.2 71 SQEEEDLIIQLHSIIGNS-WTLIAACLP-GRTDNGVKNFWN 109 89************99.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.989	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	7.49E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.13E-11	16	61	No hit	No description
PROSITE profile	PS51294	15.533	66	116	IPR017930	Myb domain
SMART	SM00717	2.0E-8	66	114	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-20	69	116	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-10	71	109	IPR001005	SANT/Myb domain
CDD	cd00167	6.81E-9	71	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSKAPRGPRK AVRRGPWSRE EDAKLTDHIA KHGLGRWSDI PRLAGIERGG KSCRLRWLNY 60 LRPDLKRAAL SQEEEDLIIQ LHSIIGNSWT LIAACLPGRT DNGVKNFWNA SIKHKLRRRG 120 IDPDTHEPMV DEGTRNGDAQ HILPSHLAAG SNTCSHGALP LPDSITSYVD TDPLELQHGV 180 VLVQPVVSSS SKVGSDPSST GSDTGEQCPN GADRAASCSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-30	14	116	27	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:19517001, ECO:0000305\|PubMed:12857823}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269\|PubMed:12857823, ECO:0000269\|PubMed:19517001, ECO:0000269\|PubMed:8980549}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163437.1	1e-161	myb-related protein Hv33-like
Refseq	XP_020163438.1	1e-161	myb-related protein Hv33-like
Swissprot	Q9LDR8	9e-55	MY102_ARATH; Transcription factor MYB102
TrEMBL	A0A3B6JQI9	1e-159	A0A3B6JQI9_WHEAT; Uncharacterized protein
TrEMBL	A0A453J0Q2	1e-159	A0A453J0Q2_AEGTS; Uncharacterized protein
STRING	Traes_4DL_FD6DBA41D.2	1e-160	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3092	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	2e-56	MYB-like 102

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615] Zhu L,Guo J,Ma Z,Wang J,Zhou C Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis. Biomolecules, 2019. [PMID:29880735]