PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_FA07D8414.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 386aa    MW: 41638.9 Da    PI: 8.9184
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_FA07D8414.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.34.1e-321342252102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F+ k+y +++d++++ ++ w   gnsfvv d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g
  Traes_4DL_FA07D8414.1 134 FVAKTYGMVDDRATDAVVAWGPAGNSFVVADPFAFSQALLPAHFKHANFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRG 212
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll++i r++s
  Traes_4DL_FA07D8414.1 213 QTHLLRHIVRRQS 225
                            **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-36130223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-51130223IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-31130223IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.3E-17134157IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-28134223IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-17172184IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340173197IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-17185197IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
AVLSTAPVHK LTRFLGSPAD HRNRKRILCF NLAAFVRLSG HKIPPPGERL PRAPPRVTPP  60
VPAPPSTSGL HRHGATHLGS THLPPSRSPS TPRPFPNQQQ ASIFSPSVAT MSGGGIESSF  120
SGSYGVGAAG VAPFVAKTYG MVDDRATDAV VAWGPAGNSF VVADPFAFSQ ALLPAHFKHA  180
NFSSFVRQLN TYGFRKVDPD RWEFAHASFL RGQTHLLRHI VRRQSGGKRG GKDGKEVGDE  240
EEDEESSSAV LAMEVVRLRE EQRATEQRVA EMWRRVQDAE RRPKLMLAFL LKVVGDPDVL  300
RRLAGSSASV SGLDEGAEEV KRPRLLLDGD GVGVDGLLYH HGGNLNMEEA LVPEPSVDMY  360
YAGGDGFGGV QADGGPPYAF HMDSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241112233129Heat shock factor protein 1
5d5v_B2e-241112233129Heat shock factor protein 1
5d5v_D2e-241112233129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3681200.0AK368120.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068I23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162064.10.0heat stress transcription factor C-2a-like
SwissprotQ6EUG42e-91HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A3B6UB850.0A0A3B6UB85_WHEAT; Uncharacterized protein
STRINGTraes_4DL_FA07D8414.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-55heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]