PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_F647D6077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 49aa MW: 5564.41 Da PI: 9.8464 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.5e-08 | 16 | 42 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p Traes_4DL_F647D6077.1 16 YKTLPCQMFAAASGCPYGHRCHFRHSP 42 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-12 | 9 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-9 | 11 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.831 | 15 | 43 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 15 | 42 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-5 | 16 | 42 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 49 aa Download sequence Send to blast |
AHGLQEMRPV IRHPRYKTLP CQMFAAASGC PYGHRCHFRH SPAPTAQSY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118668 | 2e-49 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. | |||
GenBank | AC137267 | 2e-49 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 2e-49 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 2e-49 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199363.1 | 1e-28 | putative zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q10MN8 | 4e-24 | C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | M8D6D4 | 1e-27 | M8D6D4_AEGTA; Putative zinc finger CCCH domain-containing protein 21 | ||||
STRING | Traes_4BL_58F4541EF.1 | 3e-29 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 1e-19 | C3H family protein |
Publications ? help Back to Top | |||
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