PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_E50C77AEC.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 536aa MW: 59615.9 Da PI: 6.1149 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 411.6 | 7.3e-126 | 165 | 536 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 l++++++c +av++++ + + l+++l++++s +g+p+qRl ay++e+L ar +++++ lyk+l+++e ++ + se +++++l+++++ Traes_4DL_E50C77AEC.3 165 LKQVIVACGKAVDENNCH-EDLLISELQKMVSVSGEPIQRLGAYMLEGLVARRYSTGHALYKSLKCKEPQP-TNSELMSYMHLLYDIC 250 578999******996655.58899********************************************986.567888999******* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 P+++f+++ aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+R++gpp lRiTg+++++s + l +g+rL ++A+++ + Traes_4DL_E50C77AEC.3 251 PFFRFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRITGIDDSDSAyaRGGGLDIVGRRLCNIAQSCCL 338 *************************************************************988899999****************** PP GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 pfefn+ v + ++++le+L+++ gEa+aVn+++qlh+++desv++e++rd++L++vkslsP+vv++veqea++n+++F+ r +e+l+ Traes_4DL_E50C77AEC.3 339 PFEFNA-VNAASHEVTLEHLDIRMGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFSRYMETLD 425 ******.79999**************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 yy+a+f+++++ pr+++ r++ E+++++r+ivn++acegaer+erhe ++kWr+r+ +aGF+p+pls +++++++ll+ ++s y+ Traes_4DL_E50C77AEC.3 426 YYTAMFEAIDVACPRDDKVRMSTEQHCVARDIVNLIACEGAERVERHEPFGKWRSRFAMAGFRPYPLSALVNNTIRTLLNDYNSY-YK 512 ***********************************************************************************66.** PP GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374 +ee++g ++lgWk+r+Lv+ SaWr Traes_4DL_E50C77AEC.3 513 LEEKDGVIYLGWKNRKLVVSSAWR 536 ***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.655 | 139 | 517 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-123 | 165 | 536 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MSAKASNMSY RYPDNSQIPY YSSSMHVGGN GTCYVQQNHE DHHYVSSDDG SQNSDPKSQV 60 IHPQYCTLES SSANCVYAAH SSTSPQCRSG SHISVHDSHS DHTYDSPASG ITEVPGLGFT 120 TLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN 180 CHEDLLISEL QKMVSVSGEP IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM 240 SYMHLLYDIC PFFRFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARASG 300 PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR 360 MGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR VVTLVEQEAN TNTAPFFSRY 420 METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS 480 RFAMAGFRPY PLSALVNNTI RTLLNDYNSY YKLEEKDGVI YLGWKNRKLV VSSAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-57 | 162 | 536 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251704 | 0.0 | AK251704.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124m13, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156010.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A3B6JLS9 | 0.0 | A0A3B6JLS9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IS11 | 0.0 | A0A453IS11_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_E50C77AEC.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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