PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_DC6A55EEE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 519aa    MW: 56098.4 Da    PI: 6.8424
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_DC6A55EEE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix108.34.9e-34191276187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r+eme+r+++++ k+plWe++s  mr+ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a
  Traes_4DL_DC6A55EEE.2 191 RWPKAEVHALIQLRTEMETRYQDTAPKGPLWEDISVGMRRLGYNRSSKRCKEKWENINKYFKKVKESSRKR-PEDSKTCPYFHQLDA 276
                            8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.131190248IPR017877Myb-like domain
CDDcd122032.10E-32190255No hitNo description
PfamPF138374.7E-23191277No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MRFFEGLMRQ VMERQEAMQS RLLEAIERRD QDRMIREEAW RRQEVARLAR EQDALAQERA  60
VAASRDAAVV SFIQRITGQI VPVHAPPSSF PAKPAATVTS VKPPPLQPTP VASVAPAPPT  120
PRPPVQAQPN VTTPMRTQPQ TPPPQPHATP TATEPQPQTP QTQSKEIVVH APEQLPVDMA  180
GGCTGGASPS RWPKAEVHAL IQLRTEMETR YQDTAPKGPL WEDISVGMRR LGYNRSSKRC  240
KEKWENINKY FKKVKESSRK RPEDSKTCPY FHQLDALYRT KALASSSSSS GVHAPALAPA  300
PSPARVEPAA VTVLSPVPLS SQTPPPAAQH VEHGAKNVIT NGNGHGNGNG AAMQVKASNG  360
SGAAAMFPSP VHAAGNAGNN NGTATNKLEL KQEGIAKETA PVQPAVAMNH SYGRNDRRDV  420
YDLDSDSMDE DEEDDFDDDD DDEEDDDAVP GGRNINMPPA QYDAHFLQRQ HQQQQHQNHN  480
HNVVRPNAAN GSGNPPAGNA AASSAAAATS GTPFLAMVQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578230.0AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163611.10.0trihelix transcription factor GTL1-like
TrEMBLA0A3B6U3K70.0A0A3B6U3K7_WHEAT; Uncharacterized protein
STRINGTraes_4DL_DC6A55EEE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-49Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]