PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_DA70DBAFC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 598aa MW: 65588.1 Da PI: 7.0342 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 444 | 490 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq Traes_4DL_DA70DBAFC.1 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 490 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.1E-49 | 54 | 243 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.101 | 440 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-14 | 443 | 494 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 444 | 502 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 444 | 490 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.68E-18 | 444 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-16 | 446 | 495 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 598 aa Download sequence Send to blast |
MKTEIEEEGT RGSWTEEDKS LCASVLGLDA FTYLTKGGGA ISENLVAASG LVGLQNKLQD 60 LVEADGESLC WNYAIFWQLS HTKSGELVLG WGDGSCREPH DNEMNSTTRG DIHDASSLSQ 120 QRMRKRVLER LHTAFAGADE EDDALRIDQV TDTELFFLAS MYFAFPRHVG GPGQVFATGA 180 PLWIPNNPHK VSPSNYCYRG FLASAAGFRT IVLLPFEAGV LELGSMQNVL ESAEALETIR 240 SVFLGASSKK PASGKHDENG SAQISPGLAK IFGKDLNLSR PLVNTGALPL KMNERSWDMQ 300 KNCGGESLLL PNVRKGLQNF TWSQARGLNS HHQKFGNGIL VVKSETSQRS NGAAHSPGLS 360 PFQIRNSQQI LTQPPPQSQT PRHIDFSVGS SSKSGVLTSQ AAPLGGENGS VDGLCKEQVA 420 PTMEGQQPRK RGRKPANGRV EALNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG 480 DAITHITDLQ KKLKEMESER DMFLESGMVD RRVQTPRPEV DIQVVQDEVL VRVMSPMDNY 540 PINNVFQAFE EAEVKVGESK IASNNGKVMH SFVIKSPGSE QQTREKLIAA MSRAMNSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-24 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-24 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-24 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-24 | 54 | 243 | 9 | 192 | Transcription factor MYC3 |
5gnj_A | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-25 | 438 | 500 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252240 | 0.0 | AK252240.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf144n21, mRNA sequence. | |||
GenBank | AK354365 | 0.0 | AK354365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006N15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150590.1 | 0.0 | transcription factor bHLH13-like | ||||
TrEMBL | A0A3B6JL77 | 0.0 | A0A3B6JL77_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IU07 | 0.0 | A0A453IU07_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_DA70DBAFC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5174 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-131 | bHLH family protein |
Publications ? help Back to Top | |||
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