PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_D41CB81EA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 145aa    MW: 15759.8 Da    PI: 11.7849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_D41CB81EA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.8e-191054247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           g+W++eEd llv +v+q+G ++W+ I++ ++ gRt+k+c++rw + 
  Traes_4DL_D41CB81EA.1 10 GSWSPEEDALLVALVRQHGARRWSVISAGVP-GRTGKSCRLRWCNQ 54
                           89*****************************.***********985 PP
2Myb_DNA-binding53.55.6e-1763105347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T++Ed l++ a +++G++ W+ Iar ++ gRt++++k++w++ 
  Traes_4DL_D41CB81EA.1  63 PFTAQEDALIIAAQARYGNK-WADIARLLP-GRTDNSVKNHWNSN 105
                            89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.842159IPR017930Myb domain
SuperFamilySSF466892.9E-307102IPR009057Homeodomain-like
SMARTSM007171.1E-16857IPR001005SANT/Myb domain
PfamPF002491.6E-18954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-251062IPR009057Homeodomain-like
CDDcd001672.96E-151153No hitNo description
PROSITE profilePS5129420.06260110IPR017930Myb domain
SMARTSM007179.1E-1560108IPR001005SANT/Myb domain
PfamPF002491.0E-1463105IPR001005SANT/Myb domain
CDDcd001677.75E-1263106No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2163108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEMPAPIKTG SWSPEEDALL VALVRQHGAR RWSVISAGVP GRTGKSCRLR WCNQLSPAVQ  60
HRPFTAQEDA LIIAAQARYG NKWADIARLL PGRTDNSVKN HWNSNLRRCQ RRAKAMAAAA  120
AARAAASSSS SSGSAARAKT QQQEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-37101085103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741111e-150AK374111.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054K02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177202.11e-101transcription factor MYB44-like
SwissprotO231604e-47MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3B6JPQ61e-100A0A3B6JPQ6_WHEAT; Uncharacterized protein
TrEMBLA0A453IY501e-100A0A453IY50_AEGTS; Uncharacterized protein
STRINGTraes_4DL_D41CB81EA.11e-100(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-50myb domain protein 70
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]