PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4DL_D0F3E9568.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 914aa MW: 102024 Da PI: 5.9025 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92.8 | 2.4e-29 | 2 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsd++k++rlv+pk++ae++ +++ ++ l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+ +L++gD+v Fk+ Traes_4DL_D0F3E9568.2 2 FDKVVTPSDTGKLNRLVIPKQHAEKYfpldASSNDNGLLLDFEDSAGKPWRFRYSYWNSSQSYVMTKGWSRFVKETRLEAGDIVSFKR 89 89***************************9445557889************************************************6 PP -.SS.SEE..EEEEE-S CS B3 85 d.gr.sefelvvkvfrk 99 g+ ++++++ ++r+ Traes_4DL_D0F3E9568.2 90 GvGEaARGRFFIDWRRR 106 65888999999999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 6.98E-23 | 1 | 89 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-36 | 1 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.748 | 2 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-21 | 2 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-27 | 2 | 106 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.19E-27 | 2 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF51101 | 1.7E-33 | 151 | 297 | IPR001229 | Jacalin-like lectin domain |
Gene3D | G3DSA:2.100.10.30 | 1.8E-35 | 152 | 298 | IPR001229 | Jacalin-like lectin domain |
PROSITE profile | PS51752 | 29.299 | 152 | 299 | IPR001229 | Jacalin-like lectin domain |
CDD | cd09612 | 2.31E-33 | 163 | 297 | IPR033734 | Jacalin-like lectin domain, plant |
SMART | SM00915 | 1.3E-4 | 163 | 299 | IPR001229 | Jacalin-like lectin domain |
Pfam | PF01419 | 2.0E-19 | 167 | 298 | IPR001229 | Jacalin-like lectin domain |
Gene3D | G3DSA:2.100.10.30 | 5.0E-38 | 311 | 458 | IPR001229 | Jacalin-like lectin domain |
SuperFamily | SSF51101 | 1.2E-36 | 312 | 458 | IPR001229 | Jacalin-like lectin domain |
PROSITE profile | PS51752 | 33.022 | 313 | 458 | IPR001229 | Jacalin-like lectin domain |
SMART | SM00915 | 8.5E-10 | 324 | 458 | IPR001229 | Jacalin-like lectin domain |
CDD | cd09612 | 3.33E-26 | 324 | 457 | IPR033734 | Jacalin-like lectin domain, plant |
Pfam | PF01419 | 2.5E-20 | 328 | 458 | IPR001229 | Jacalin-like lectin domain |
SuperFamily | SSF56112 | 1.29E-60 | 503 | 764 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 2.5E-9 | 507 | 552 | No hit | No description |
SMART | SM00220 | 3.6E-34 | 518 | 759 | IPR000719 | Protein kinase domain |
PROSITE profile | PS50011 | 30.139 | 518 | 762 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 524 | 545 | IPR017441 | Protein kinase, ATP binding site |
Pfam | PF00069 | 1.1E-36 | 567 | 757 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 1.3E-44 | 584 | 770 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 623 | 635 | IPR008271 | Serine/threonine-protein kinase, active site |
PROSITE profile | PS50202 | 15.018 | 779 | 909 | IPR000535 | Major sperm protein (MSP) domain |
SuperFamily | SSF49354 | 1.18E-16 | 794 | 909 | IPR008962 | PapD-like |
Gene3D | G3DSA:2.60.40.360 | 1.0E-15 | 794 | 907 | IPR008962 | PapD-like |
Pfam | PF00635 | 1.3E-10 | 795 | 886 | IPR000535 | Major sperm protein (MSP) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004674 | Molecular Function | protein serine/threonine kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0030246 | Molecular Function | carbohydrate binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 914 aa Download sequence Send to blast |
MFDKVVTPSD TGKLNRLVIP KQHAEKYFPL DASSNDNGLL LDFEDSAGKP WRFRYSYWNS 60 SQSYVMTKGW SRFVKETRLE AGDIVSFKRG VGEAARGRFF IDWRRRRGPD VVLPPPHHRG 120 FNLLSVGSDG FACPDVNLEG DSVEEILDKA YITKIGPWGG NRGNFNDIKV SPLRLNSITI 180 RSGEVIYSLA FSYSDNYGKQ HHAGPWGGCK DFSYGSFDTI QLGPSEFLTK VSGTIAFSAQ 240 YSSNVITSVM FITTARRYGP FGGGVGIPFQ SPVMSNGSIV GFFAHAEWVV ESIGLYVNSE 300 SKLWEPMKGQ DSVTKIGPWG GDSGRPNDVN VLPRRLLSVV VRNSTVISSL TFTYIDWDGQ 360 PQTAGPWGGL GESFDGKVDT IILGRSEFLT EVSGTLGWNS GYSDVVTSLY FVTNTGGYGP 420 YGKGGGTRFR SSHSNGSIVG FFVNAADVID AIGVYFSPER ETCKEKEEGG FGISRSMAYR 480 ERVEIESASN DLEHIVLDQS AEPTNLPLAL LKDITEDFND KRQIGRGGFG IVYKGDLQNR 540 SVAVKRILSC HTFNDEAFNQ SGEPWKYVFA EMRERLLCFE YIKNGSLDRY LTDELRGLEW 600 HTRYQIIRGI CDGLVYLHTE KGIVHRDMKP ENILLDDLMI PKITDFGISK LLDGATHAVT 660 SDPTGSRGYC APEFIARGEV STRSDIYSLG VIITELVTGC KDEPHIQNVL RRWRYRWNES 720 ANYPPFGYQQ VSKCIEIALK CLSDSPKKRP KISDIVSMLN TMESTKEHIT NVGNSPAGQI 780 SAYPWELLEF DLLELNFPFE INKQIPCSLQ LTNVTDDYVA FDIEMMGILR YCIEPEKRVV 840 PPRSKCNVMV TLQPHERVPH AMVCKDELFI LRCAAVSEGL TAEDIIEDML NKKSGKEEAD 900 KVTLKVVILP ITVD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-52 | 1 | 106 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-52 | 1 | 106 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK366601 | 1e-113 | AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193609.1 | 0.0 | uncharacterized protein LOC109779403 | ||||
TrEMBL | A0A3B6JNT6 | 0.0 | A0A3B6JNT6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DL_D0F3E9568.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22619 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01030.1 | 2e-47 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|