PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_C77385A0D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 728aa MW: 82329.8 Da PI: 7.5292 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 36.5 | 6.8e-12 | 28 | 64 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgp g +tLCnaCG+ ++k +l Traes_4DL_C77385A0D.2 28 CLRCGISAnaTPHMRRGPMGRRTLCNACGIAWAKGKL 64 5567766667***********************9876 PP | |||||||
2 | FAR1 | 87.2 | 2.3e-27 | 98 | 183 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrks+s ks ++ + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++ +k ++ +k+++++++ +HnH+ Traes_4DL_C77385A0D.2 98 EFYNRYAGHMGFSVRKSSSDKS-ADNITRSRTFVCSREGFRKDKKGA-NEVKRPRPETRIGCPARMIIKITSYNKYRIAEFVADHNHQ 183 6********************9.555699**************9999.99*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.76E-9 | 22 | 74 | No hit | No description |
SMART | SM00401 | 3.4E-6 | 22 | 77 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-10 | 26 | 64 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.3E-9 | 30 | 64 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF03101 | 3.3E-24 | 98 | 183 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-25 | 307 | 401 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.9E-4 | 575 | 619 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.212 | 586 | 622 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.3E-4 | 597 | 624 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MEFEGEGGIG VGLGDGDGDN RVDEPTRCLR CGISANATPH MRRGPMGRRT LCNACGIAWA 60 KGKLRKVIDS DTPIDDATVA KMVPEVGMEF DNEDKAYEFY NRYAGHMGFS VRKSSSDKSA 120 DNITRSRTFV CSREGFRKDK KGANEVKRPR PETRIGCPAR MIIKITSYNK YRIAEFVADH 180 NHQPAPPSTM HMLRSQRVIT EVQTTECNSS EDSTTPSRFS GDSLVQQAGA FRNVNFLPAD 240 YRSSLCSKRM KNMQPGDAGG VVKYLQSMQL NNPSFFYAVQ LDEDDKLTNI FWADSKSRVD 300 FSYFSDVVCL DTTYKINAHV RPLTLFLGVN HHNKISIFGA ALLYDESVES FKWLFDTFKI 360 ATDGKQPKTI LTDQSSAASA AISAVWPSTI HCLCPWQVFQ NTVKHLNHIF QGSKTFAKDF 420 SRCVYDYEDE EGFLVGWRTM LEKYDLRNNE WLHNLFEDRD KWASAYNRHV FTADIKSSLQ 480 LESVSNVLRK YLSPQFDFLS FFKHYERVLD EHRYAELQAD FHASQSFPRI PPSKMLKQAA 540 NIYTPVVFEI FRREFEMFVD SVIYSCGESG TASDYRVAVT DRPGEYYVRF ESSDLSVVCS 600 CKKFESMGIQ CCHVLKVLDF RNIKELPQKY FLRRWTKDAK SADRSNQEFL NDGASQTLSS 660 CLNAPAPIIG QPQVHLNNLH DHVTSISTSG QQALQGNAHG NQGYAPLAGM NQQPFIGGFP 720 LNHETGLG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 150 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249301 | 0.0 | AK249301.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33i23, mRNA sequence. | |||
GenBank | AK251885 | 0.0 | AK251885.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf133l23, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197214.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_020197215.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A453IXW9 | 0.0 | A0A453IXW9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_C77385A0D.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-115 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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