PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_ACF3BE9C5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 37593.1 Da PI: 4.4145 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.5e-11 | 182 | 224 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+++L Traes_4DL_ACF3BE9C5.1 182 MAERRRRKRLNDRLSMLRSIMPKI-----TKMDRTSILGDTIDYVNEL 224 89*********************7.....6***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.646 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 178 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-9 | 181 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-12 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-14 | 182 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.72E-4 | 188 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDQLDEQSFL DELMSLRREE APAPAPWQAY PGSGMMTTSD LLFYGGEDVA EASSSMDLVG 60 PFQQPMAPLP AAPPHRSHEE YNFDCLSEVC NPYGSCGGVV PGPGVVHGVG QALSQDPLHD 120 AMAEDGTTSG NLHHGGGASS SPVPFVFGAG GAGENSEMIR GVFPGAYARS KLNGGTTSKN 180 LMAERRRRKR LNDRLSMLRS IMPKITKMDR TSILGDTIDY VNELTERIKT LEEEIGATPE 240 DLNLLNTTKN LSSGSSEEMP MRNSTKFVIE KQGDGETRID ICCATSPGVL ISTVSALEGL 300 GLEIEQCVVS CFGDFAMQAS CSQEEGRSQV TSTDEIKQAL FTSAGYGGRF L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 190 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367452 | 0.0 | AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150250.1 | 0.0 | transcription factor bHLH93-like isoform X1 | ||||
Swissprot | Q9LSL1 | 4e-54 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A3B6JN39 | 0.0 | A0A3B6JN39_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DL_ACF3BE9C5.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 7e-56 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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