PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_A83084AC1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 316aa MW: 34555.7 Da PI: 9.0083

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_A83084AC1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.9	3.2e-31	40	144	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kv tpsdv+k++rlv+pk++ae++ +++ ++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + Traes_4DL_A83084AC1.1 40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldASSTDKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGR 127 89*************************966777899*********************************************6 PP -.SS.SEE..EEEEE-S CS B3 85 d.gr.sefelvvkvfrk 99 g+ +++l++ ++r+ Traes_4DL_A83084AC1.1 128 GvGEaARGRLFIDWRRR 144 658889999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-40	29	144	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.19E-29	37	142	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.82E-26	38	125	No hit	No description
SMART	SM01019	8.5E-22	40	145	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-28	40	144	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.212	40	145	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEFTAIRPST AAAGGCSSPP PADHKAEEEA AGAVEKEHMF DKVVTPSDVG KLNRLVIPKQ 60 HAEKYFPLDA SSTDKGLLLS FEDRAGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG 120 DTVSFGRGVG EAARGRLFID WRRRPDVVLP PGHHRGFALP SVPFSPWMAH PAGPGGAGGR 180 MFLQATTPAT VYDYDAYQHH HQRRHIGYDG YGAAPGRQVL FYQPQQHYHH QHQSLVLESV 240 PVRMVAAPEH PEASAVATSG SKRVRLFGVN LECAADAEED FSGPGRTATT ALQLLSPASS 300 SSSSSGKARC SLNLDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	8e-63	35	147	3	116	B3 domain-containing transcription factor NGA1
5os9_B	8e-63	35	147	3	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366601	0.0	AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197119.1	0.0	B3 domain-containing protein Os03g0120900-like
Swissprot	Q8LMR9	1e-116	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A453J6B0	0.0	A0A453J6B0_AEGTS; Uncharacterized protein
STRING	Traes_4DL_A83084AC1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	2e-68	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]