PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_A56CAE1AB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 163aa MW: 17831.8 Da PI: 7.9931 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 64 | 148 | 10 | 93 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 v +++ l +p +f ++hg+ ++++++l++ +g+sW v+l+++ +s++ l+ GW +F+ +ngL +gD++ F+ g+ s +e + Traes_4DL_A56CAE1AB.1 64 VRQKQYLNVPVEFQNAHGYAERSKVELRM---RGKSWFVNLKHSPRSRGrprASLRYGWHQFCVDNGLGVGDTCFFRALGEgSAGEVH 148 66778899**********99888766664...67*******994444444669************************88887888544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-23 | 50 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-15 | 51 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.76E-12 | 51 | 151 | No hit | No description |
SMART | SM01019 | 5.1E-7 | 52 | 153 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 55 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-13 | 64 | 147 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MCRRHYQHDD DGSSGSSSDG DSGSEDGSSN GDGGGNSSSM AVMGIDDGPA SLFTVMLREC 60 NLGVRQKQYL NVPVEFQNAH GYAERSKVEL RMRGKSWFVN LKHSPRSRGR PRASLRYGWH 120 QFCVDNGLGV GDTCFFRALG EGSAGEVHLL KVEVRKRDGS FLV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376998 | 1e-156 | AK376998.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148430.1 | 1e-116 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 5e-44 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A446SBG3 | 1e-116 | A0A446SBG3_TRITD; Uncharacterized protein | ||||
STRING | Traes_4DL_A56CAE1AB.1 | 1e-116 | (Triticum aestivum) | ||||
STRING | Traes_5BL_07CE92C7E.1 | 1e-116 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-07 | B3 family protein |
Publications ? help Back to Top | |||
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