PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_A13AE4BE6.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 698aa MW: 76982.5 Da PI: 6.1282 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.7 | 1.8e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+ +yLk k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkat Traes_4DL_A13AE4BE6.2 6 LPPGFRFHPTDEELIIYYLKSKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKAT 92 79****************************.99**************95334455777****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Traes_4DL_A13AE4BE6.2 93 GKDRKVNS-QKRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 ********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-63 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.223 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI IYYLKSKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QKRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECEI DNGLQDAYAL CRIFKKTAPG PKIMEHYGAA QYHGEQPQWT 180 PSSVERSPTP CDGRGGGDDF ESSSFSFPTE APMTSGSMHG GGFGMQMMGG MPQEDGRWMQ 240 FLSEDAFNAT NPYFMNPAAA SNFSCLPSKV DVALECARLQ HRLALPPLEV EDFPHDVSLD 300 TKTGILQSNP NEVDILQEFL SVASASQELI NGSGSSSYPD MWLGAGTSSG GGHYMNELSS 360 LVDLGAAKAK EEVDNFYHMC GIGASMMRRD DEPGRLVEIS DMQEFKEEKK RPVENLRGVK 420 LVNNDLGEIV VEGDESNPAE GITHYPIQDT SENSGEAGHH MTDHTTDEGG IDTAPIFSQS 480 QPDDFALAIG FDNDGDDNTD PNASFDLYGK VDVQRGLFVS RVGAAKTFFH RVEPPNKVSF 540 HLNPAASEVS KAIVEKFHYY LPVTSKVSGS GSSSSRVSVF GKVKALIRGK FPTMRRPPSP 600 LQHQRSETTV SELLQIVSLL LAPKEAVAER EEMVSRKKAK KVKPGRWGCD GGCSSSWQLG 660 LPGKGSNKGI SSMFLSGKWA FLTSALAAVR APGPCNHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-54 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-54 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190976.1 | 0.0 | uncharacterized protein LOC109776722 | ||||
TrEMBL | A0A3B6JPZ9 | 0.0 | A0A3B6JPZ9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453J6S3 | 0.0 | A0A453J6S3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_A13AE4BE6.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-125 | NAC domain containing protein 28 |
Publications ? help Back to Top | |||
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