PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_9DB76B434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 365aa MW: 38171.8 Da PI: 10.9728 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.7 | 1.3e-38 | 71 | 131 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+ss Traes_4DL_9DB76B434.1 71 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS 131 67899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-34 | 55 | 120 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.4E-33 | 74 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.553 | 75 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 77 | 113 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MHSICQWVRR RVRRGGRPRA VGCRPTAGTA AGTPEVGGLP RSSAANEAAA GQQARPNSMT 60 ERARMARVPQ PEPALKCPRC DSTNTKFCYY NNYSLSQPRH FCKACRRYWT RGGALRSVPV 120 GGGCRRNKRS SKSSAGAASS SKPSSSSARQ LPGGASSMPS TTASTTLGAD GASIPPGLSS 180 MSHHLPFMGA MHPPGANLGL AFSAGLPQLA MQQQHHHMDG VDQFPLASGG GATFGASLEQ 240 WRVQQQQQFP FLELPPAPPM YQLGLQANRA AGSSAAAPAP SPAMFTLGQS SASTARRDEG 300 SMKQADSKGQ EMTLQRQFMM EALRQGDAVW GGNASDNNGN GSGSWTMNIP GFHSSSGGGD 360 GGGLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375844 | 0.0 | AK375844.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107J22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179480.1 | 0.0 | dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A3B6JLJ9 | 0.0 | A0A3B6JLJ9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IDX9 | 0.0 | A0A453IDX9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_9DB76B434.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12301 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 2e-36 | Dof family protein |
Publications ? help Back to Top | |||
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