PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_967152326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 37610.8 Da PI: 4.8333 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++l+++++++G g+W++ ++ g+ R++k+c++rw +yl Traes_4DL_967152326.1 14 RGRWTAEEDDILANYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.4e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eEd+l+v++++ lG++ W++Ia++++ gRt++++k++w+++l Traes_4DL_967152326.1 67 RGNISKEEDDLIVKLHATLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.986 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.60E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.884 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.61E-13 | 71 | 112 | No hit | No description |
Pfam | PF06640 | 1.5E-27 | 130 | 253 | IPR010588 | Myb-related protein P, C-terminal |
Pfam | PF06640 | 2.1E-25 | 239 | 346 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGRAPCCDKV GLKRGRWTAE EDDILANYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRDGVRRGNI SKEEDDLIVK LHATLGNRWS LIASHLPGRT DNEIKNYWNS HLSRQIHTFR 120 RIYTAVSDTA ITVDINKLSA AGKRRGGRTP GQSPRSSTKK KPVPEPITKA KDEASPAGAA 180 SSVSSSPQSD EARSAVVDPD QNQPNNSISV SHTSDGPCSE DGTWPMVMDP VDQTGVLEAN 240 CTVDQQMGLW EVNSSMNQIG IMEDESEMQA LLSGGVTAEN GLVGIDPGGL SQVDDLLDMD 300 WEGFASHLWD QPAQNGLLQP AEPQAATGSE SDELESFVSW LLSDAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356334 | 0.0 | AK356334.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1033F20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199233.1 | 0.0 | myb-related protein P-like isoform X1 | ||||
Swissprot | P27898 | 1e-92 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A3B6JL58 | 0.0 | A0A3B6JL58_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DL_967152326.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 4e-74 | myb domain protein 12 |