PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_9477862E8.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 322aa MW: 34960.1 Da PI: 4.71

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_9477862E8.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	145	192	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + kK +K++ L +++Y+k+L+ Traes_4DL_9477862E8.2 145 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIDYVKQLE 192 5799**********************.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.348	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-9	145	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-15	146	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	146	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.68E-9	147	196	No hit	No description
SMART	SM00353	9.3E-11	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEQPNQWLTQ TEQEELAYMY QQEGDPVTVP GMEQQFAEPP LPGHQEQYYT TSPMATPSFH 60 PSRSSDLPSF GGSSSLPNLP FGLATVKNEL GQPSPPPPSS NFLSFGAGQA GTLNFSGGAW 120 QHDGVEGTMQ LQAPERRSRA PANAQEHVIA ERKRREKLQQ QFVSLATIVP GLKKTDKISL 180 LGSTIDYVKQ LEDKVRALEE QGSRRSSEST TVFESKCRIS AADNDAAGPS GSEDAAEDSS 240 PAVEAIIRGN TALLKICFKE RRGVLVMVLS ELENQGLSII NTNVVPFTDS CLNITITAKI 300 EEGFSSAAEL VRNLTVALRC FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	155	ERKRRE
2	151	156	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156973.1	0.0	transcription factor bHLH19-like
TrEMBL	A0A3B6JML6	0.0	A0A3B6JML6_WHEAT; Uncharacterized protein
STRING	Traes_4DL_9477862E8.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	6e-36	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]