PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_8A9D9ACCB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 25922.2 Da PI: 9.1379 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l+ +vk +G g+Wk ++ + g+ R++k+c++rw++yl Traes_4DL_8A9D9ACCB.1 14 RGAWTSKEDDTLASYVKAHGEGRWKEVPLKAGLQRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Traes_4DL_8A9D9ACCB.1 67 RGNISDDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.249 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.69E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.58E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.256 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.47E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRRACSANE GVKRGAWTSK EDDTLASYVK AHGEGRWKEV PLKAGLQRCG KSCRLRWLNY 60 LRPSIKRGNI SDDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS TLGRKVLPAR 120 LDTTRMVASP GASAGSCSST GAATSALSSN CGAGTSAKAA APPLSIAVWA PKPVRCTGGL 180 FFGRDAPPPP VTETRAVGGD GDECSGSSLG ASSGGGDWMD DVRALSSFLE SDEDWVNSLQ 240 MVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-27 | 9 | 116 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB252146 | 0.0 | AB252146.1 Triticum aestivum Tamyb3 mRNA for myb-related protein, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156277.1 | 1e-173 | anthocyanin regulatory C1 protein-like | ||||
Swissprot | P10290 | 2e-81 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A453J2P5 | 1e-173 | A0A453J2P5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_8A9D9ACCB.1 | 1e-175 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 9e-48 | myb domain protein 7 |