PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_88ABAD6C0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 330aa    MW: 36411.5 Da    PI: 6.6605
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_88ABAD6C0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-18117170356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Traes_4DL_88ABAD6C0.1 117 KKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 170
                            4568999**********************************************9 PP
2HD-ZIP_I/II130.66.2e-42116206191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L+
  Traes_4DL_88ABAD6C0.1 116 EKKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQ 203
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eel 91 
                            +e+
  Traes_4DL_88ABAD6C0.1 204 SEI 206
                            987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1997173IPR009057Homeodomain-like
PROSITE profilePS5007116.941112172IPR001356Homeobox domain
SuperFamilySSF466893.25E-19113174IPR009057Homeodomain-like
SMARTSM003891.1E-16115176IPR001356Homeobox domain
CDDcd000869.48E-17117173No hitNo description
PfamPF000462.0E-15117170IPR001356Homeobox domain
PRINTSPR000311.1E-5143152IPR000047Helix-turn-helix motif
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5152168IPR000047Helix-turn-helix motif
PfamPF021831.3E-15172211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASNGMASSP SAFFPPNFLL HMQQAPPQHD PQEHHQQHHH HHHEHHLPPP HPQHNPFLPS  60
PQCPSLQDFR GGLSPMLGKR PAMYGGGDGG CGGDEVTGGG ANEEETSDDG SQLGGEKKRR  120
LNVEQVRTLE KNFEVANKLE PERKMQLARA LGLQPRQVAI WFQNRRARWK TKQLEKDYDV  180
LKRQFDAVKA ENDALLSHNK KLQSEILGLK GCREAASELI NLNKETEASC SNRSENSSEI  240
NLDISRTPPS DGPMDAPPSH QQGGGGGGMI PFYPSVARPA GVDIDHLLHA SVPKMEHHHG  300
GPDTASFGNL LCGVDEPPPF WPWADHQQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538560.0DQ353856.1 Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188842.10.0homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W91e-140HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3B6JPQ90.0A0A3B6JPQ9_WHEAT; Uncharacterized protein
STRINGTraes_4DL_88ABAD6C0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]