PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_879C8557D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 682aa MW: 75647.9 Da PI: 6.9951 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.2 | 2.4e-27 | 39 | 129 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ + ++++++r+ tr+gCka++++kk + gkw+vtk+++ H Traes_4DL_879C8557D.1 39 DFYSLYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRNCEglhPDQKQQERTGTRVGCKAMIMIKKIDPGKWVVTKFVKTH 126 6*******************************************9999999999********************************** PP FAR1 86 nHe 88 nH Traes_4DL_879C8557D.1 127 NHG 129 **6 PP | |||||||
2 | FAR1 | 89.4 | 5e-28 | 177 | 269 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eH Traes_4DL_879C8557D.1 177 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKeitdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEH 264 9*****************************************99999998899999******************************** PP FAR1 86 nHela 90 nH+l Traes_4DL_879C8557D.1 265 NHSLL 269 **996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-24 | 39 | 129 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 5.0E-26 | 177 | 269 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50103 | 10.352 | 430 | 458 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MEISSHEPSE AEILIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYTRS 60 RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK KIDPGKWVVT 120 KFVKTHNHGS VPPRKLDIRS AHQDLNPVEK PHSAEEDPVE EPVEGMEFDS EETAKLFYIN 180 YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEITDEGKT KRPRMITRVG 240 CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS SKQAPSTSNI TSGENAEFAA KSSDPDEAKV 300 EEYSAGIQCN STDSLTVLYN QLCQEAIKFA KEGSVTEEIY HVAMSALKEA AEKVAQLKSC 360 HPTMPHRGVS SSESKHKVVQ MKTMSASQCS DVAKQKTTPS QLTMFQESTS KLMFIPTNLL 420 TDSGLANSDN NHPSLCAFTS SGRQCRHGSE CSYLHAENRK EDCPEKYQNS TSSRATQGNH 480 STYHGHSEET TVAIPAIPLT LYMPLSRNSP GASADGQYKL LAAPIEAVPI SYRPAEPIRQ 540 PKRSFCNLGP LPGVMSELTR REKGPHPLVH ATALACGARV VPVEEAASLI KAIESKIRSG 600 GAKIARLPSS RLTRLVPEAV SMSSSSEDGE DNDHSEPPAV NVAGYCHDDQ ISEEMKLQGE 660 ASELETDSEN CSGHENHDTA DC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176088.1 | 0.0 | uncharacterized protein LOC109761678 | ||||
TrEMBL | A0A453IH38 | 0.0 | A0A453IH38_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_879C8557D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-29 | FAR1 family protein |
Publications ? help Back to Top | |||
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