PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_872A1302F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 206aa    MW: 23126.1 Da    PI: 10.3372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_872A1302F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.22.5e-3137132187
                            EEEE-..-HHHHTT-EE--HHH.HTT.........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                            f+kvltpsdv+k++r+vlpk++ae+h             +   + + l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +
  Traes_4DL_872A1302F.1  37 FEKVLTPSDVGKLNRIVLPKQHAEKHiplkrapetT---TtadKAVLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLVA 121
                            99*************************998776652...034478899**************************************** PP

                            T-EEEEEE-SS CS
                     B3  77 gDfvvFkldgr 87 
                            gD+vvF+ ++ 
  Traes_4DL_872A1302F.1 122 GDVVVFSCSEY 132
                            ******96543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-3832147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-3034134IPR015300DNA-binding pseudobarrel domain
CDDcd100178.20E-3035127No hitNo description
PROSITE profilePS5086314.32537146IPR003340B3 DNA binding domain
PfamPF023621.5E-2837131IPR003340B3 DNA binding domain
SMARTSM010191.1E-2137144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MLRKHTYSDE LRRGLRRGRG IGGRAEPTPS WAREPLFEKV LTPSDVGKLN RIVLPKQHAE  60
KHIPLKRAPE TTTTADKAVL LNFEDGQGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLV  120
AGDVVVFSCS EYGHEKQFYI DYKKTTTVNS GASASPPPPV VETGKGEQAR XVVRLFGVDL  180
AGEMRGLAAP AELELFKSSY SLRSSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-473415411126DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164922.11e-127AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS06e-78Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A446SGL21e-129A0A446SGL2_TRITD; Uncharacterized protein
STRINGTraes_4DL_872A1302F.11e-150(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-53related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]