PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_7BD3165FB.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 173aa MW: 19098.9 Da PI: 7.1311

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_7BD3165FB.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.5	6.6e-15	43	89	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs +++Lr+llP+ +K +Ka+ L ++++++k+L Traes_4DL_7BD3165FB.1 43 KSHSEAERRRRERINSHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 89 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.168	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-12	43	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.44E-5	43	92	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-16	44	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-16	44	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-14	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	1.26E-7	127	173	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.1E-4	127	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGHHGSPVHG MMMPPPFGAS PFGDFGRMTA QEIMDAKALA ASKSHSEAER RRRERINSHL 60 ARLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSEIREEA CPLPTEADEL TVDASSDEDG 120 RLLVRASLCC DDRPDLLPDL IRALKALRLR ALKAEITTLG GRVKNVLVVT EDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK377163	0.0	AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189500.1	1e-119	transcription factor bHLH30-like
Swissprot	Q9S7Y1	6e-69	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A446QQT5	1e-119	A0A446QQT5_TRITD; Uncharacterized protein
TrEMBL	M8ARU1	1e-119	M8ARU1_TRIUA; Transcription factor bHLH30
STRING	MLOC_66385.1	1e-122	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-42	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]