PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_63ACC4A09.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 630aa MW: 67887.2 Da PI: 7.0941 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 9.7e-16 | 283 | 342 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g ++ ++++lg ++ +++Aa+a++ a++k++g Traes_4DL_63ACC4A09.1 283 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqtRKgRQVYLGGYDNEDKAARAYDLAALKYWG 342 78*******************988898888446**********99*************98 PP | |||||||
2 | AP2 | 46.8 | 7.1e-15 | 385 | 436 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Traes_4DL_63ACC4A09.1 385 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 436 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.9E-12 | 283 | 342 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-16 | 283 | 352 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.05E-19 | 283 | 350 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.8E-16 | 284 | 351 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 284 | 350 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-28 | 284 | 356 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 285 | 296 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 385 | 445 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-10 | 385 | 436 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.89E-24 | 385 | 446 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-18 | 386 | 444 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-33 | 386 | 450 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.072 | 386 | 444 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-6 | 426 | 446 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MRAMASGGNW LGFSLSPHMA MEVPSSSEPD HAQPASASAM SASPTNAATC NLLFSPPSQM 60 AAPPPGYYYV GGAYGDGTST AGVYYSHHPV MPITSDGSLC IMEGMMPSSS PKLEDFLGGG 120 NGSAHDAVTY YSHHQQQQQD QQDQEVSRIY QHHQQQLAPY NFQHLTEAEA IYQEATAPTD 180 EAMAAAKNLL VTSYGSCYSN AGMQPLSLSM SPRSQSSSCV SAAPQQHQMA AVAAAAAASM 240 VASQGGSNGG GEQCVGKKRG TGKGGQKQPV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH 300 LWDNSCKKDG QTRKGRQVYL GGYDNEDKAA RAYDLAALKY WGPSTNTNFP LENYREEVEE 360 MKSMTRQEFV AHLRRRSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFTTQ 420 EEAAEAYDVA AIKFRGLNAV TNFDITRYDV DKIMESSSLL PGDEARKVRP IEAASHVSPM 480 HNGGGELSHA EEGSSGVWRM VLHGTPQQAA PCTPEVADLQ KGFMDGDPRS SLHGNGIAGF 540 DVESAAHDID VSGKINYSNS SSLVTSLSNS REGSPERFSL PSLYAKHPNA VSLASMSPWM 600 AMPAPTAAHT LRGPNSSIPS MPVFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB458518 | 0.0 | AB458518.1 Triticum aestivum WANT1 mRNA for AP2 transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159300.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-141 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A3B6JLD0 | 0.0 | A0A3B6JLD0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453ILH6 | 0.0 | A0A453ILH6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_63ACC4A09.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-113 | AP2 family protein |