PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_59B1C9052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 18439.5 Da PI: 10.1694 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.5 | 2.1e-31 | 22 | 114 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+ tpsdv+k++rlv+pk++ae+h g++ ++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD+v Traes_4DL_59B1C9052.1 22 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGLLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTV 109 89****************************999955667899********************************************** PP EEEE- CS B3 81 vFkld 85 +F+++ Traes_4DL_59B1C9052.1 110 TFSRS 114 **943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-38 | 19 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-30 | 21 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.311 | 22 | 133 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-21 | 22 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-28 | 22 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.61E-28 | 22 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
QGLRRGHGRA QPTPAWAREF PFEKAVTPSD VGKLNRLVVP KQHAEKHFPP TTAAATGSNG 60 KGLLLNFEDG QGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KGLRAGDTVT FSRSAYVMND 120 TDEQLFIDYK QSNKNEEAAD AAKNESGHAA VKLFGVDIGG GGMAGSSGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-50 | 19 | 130 | 11 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361289 | 0.0 | AK361289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136P02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164924.1 | 1e-121 | AP2/ERF and B3 domain-containing protein Os01g0141000-like | ||||
Swissprot | Q0DXB1 | 2e-68 | Y2641_ORYSJ; B3 domain-containing protein Os02g0764100 | ||||
Swissprot | Q9AWS0 | 2e-68 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | A0A3B6JNT8 | 1e-121 | A0A3B6JNT8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DL_59B1C9052.1 | 1e-123 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 5e-52 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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