PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_5851FBD0C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 37292.9 Da PI: 5.125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 178 | 220 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+++L Traes_4DL_5851FBD0C.1 178 MAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDTIDYVNEL 220 89*********************7.....6***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.888 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-16 | 174 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 177 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 178 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.12E-4 | 184 | 225 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDQLDEQSFL DELMSLRREE APVPAPAPWQ AYPGSGMMTT SDLLLYGXPG GMDFAGPIQQ 60 PMAPPPGTSP HGPHEEFNFD CLSEVCNPYR SCVGVVPRHG VAHGAGQALS QFPLHDAMAE 120 DGPSGGNLHR GGGSSSSPVP IVFGAGGAGE SPEMIRGVLT GAHARGKLNG GTTSKNLMAE 180 RRRRKRLNDR LSMLRSIVPK ITKMDRTSIL GDTIDYVNEL TERIKTLEEE IGATPEELNL 240 LNTRKNFSSG SSEEMPTRNS TKFVIEKQGD GEMRIDICCA TSPGVLISTV SALEVLGLEI 300 EQCVVSCFGD FAIQASCSQE EGRSRVTSTN EIKQALFTSA GYRGRCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 186 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367452 | 0.0 | AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150227.1 | 0.0 | transcription factor bHLH61-like isoform X1 | ||||
Swissprot | Q9LSL1 | 1e-52 | BH093_ARATH; Transcription factor bHLH93 | ||||
Swissprot | Q9LXA9 | 8e-53 | BH061_ARATH; Transcription factor bHLH61 | ||||
TrEMBL | A0A3B6JP15 | 0.0 | A0A3B6JP15_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453J3E8 | 0.0 | A0A453J3E8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_5851FBD0C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 8e-55 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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