PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_4C78C56A4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 368aa    MW: 41415.9 Da    PI: 9.3567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_4C78C56A4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12227252126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            y   +C+++ +tG+C yGd+CkF+H+
  Traes_4DL_4C78C56A4.1 227 YQPDICKDYKETGYCGYGDSCKFMHD 252
                            66789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9224257IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878226254IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10227252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-12227257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.2E-13294345IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.3E-8303344No hitNo description
SuperFamilySSF578502.64E-13303346No hitNo description
SMARTSM001847.5E-5304341IPR001841Zinc finger, RING-type
CDDcd001621.91E-8304345No hitNo description
PROSITE profilePS5008910.689304342IPR001841Zinc finger, RING-type
PROSITE patternPS005180319328IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
SRCSYDLQAS FGTTGPLPRD VPDQDGPVSS SIRSIARPPP KPYPHVRRRR RRARCRRLXC  60
NFVRKPPKNI RKRPAASVGS DGEEGSGGDD SGAIAAARSK KPPSTTSKLF FSSADNSHEP  120
RRFQFESSRT IQSSTDNRAT ATLETETAYD RDARAIRERQ LKQAEESLKK NPSASSSSGE  180
LYKGIHGYTD HKAGFRREHT VSGEKAGGAH GPLRASAHIR LSTRFDYQPD ICKDYKETGY  240
CGYGDSCKFM HDRGDYKSGW QLEREWDEAE KARKRRIAMR ELDGSDAEAE EGDSDDEEAL  300
PFACFICREP FVDPVVTKCK HYFCEHCALK HHSKNKKCFV CNKPTLGIFN AAQEIRKKIA  360
QDKKQQDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-62136359113317RING finger protein 113A
5z58_M3e-62136359113317RING finger protein 113A
6ff4_t3e-62136359113317RING finger protein 113A
6ff7_t3e-62136359113317RING finger protein 113A
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14653RRRRRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614000.0AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-159C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3B6JMH30.0A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBLA0A453IHI90.0A0A453IHI9_AEGTS; Uncharacterized protein
TrEMBLR7W9H90.0R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15
STRINGTraes_4DL_4C78C56A4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-128C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]