PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_4C78C56A4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 41415.9 Da PI: 9.3567 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.8e-12 | 227 | 252 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Traes_4DL_4C78C56A4.1 227 YQPDICKDYKETGYCGYGDSCKFMHD 252 66789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-9 | 224 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 226 | 254 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-10 | 227 | 252 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-12 | 227 | 257 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.2E-13 | 294 | 345 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 1.3E-8 | 303 | 344 | No hit | No description |
SuperFamily | SSF57850 | 2.64E-13 | 303 | 346 | No hit | No description |
SMART | SM00184 | 7.5E-5 | 304 | 341 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 1.91E-8 | 304 | 345 | No hit | No description |
PROSITE profile | PS50089 | 10.689 | 304 | 342 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 319 | 328 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
SRCSYDLQAS FGTTGPLPRD VPDQDGPVSS SIRSIARPPP KPYPHVRRRR RRARCRRLXC 60 NFVRKPPKNI RKRPAASVGS DGEEGSGGDD SGAIAAARSK KPPSTTSKLF FSSADNSHEP 120 RRFQFESSRT IQSSTDNRAT ATLETETAYD RDARAIRERQ LKQAEESLKK NPSASSSSGE 180 LYKGIHGYTD HKAGFRREHT VSGEKAGGAH GPLRASAHIR LSTRFDYQPD ICKDYKETGY 240 CGYGDSCKFM HDRGDYKSGW QLEREWDEAE KARKRRIAMR ELDGSDAEAE EGDSDDEEAL 300 PFACFICREP FVDPVVTKCK HYFCEHCALK HHSKNKKCFV CNKPTLGIFN AAQEIRKKIA 360 QDKKQQDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 3e-62 | 136 | 359 | 113 | 317 | RING finger protein 113A |
5z58_M | 3e-62 | 136 | 359 | 113 | 317 | RING finger protein 113A |
6ff4_t | 3e-62 | 136 | 359 | 113 | 317 | RING finger protein 113A |
6ff7_t | 3e-62 | 136 | 359 | 113 | 317 | RING finger protein 113A |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 53 | RRRRRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361400 | 0.0 | AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156391.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q6K4V3 | 1e-159 | C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A3B6JMH3 | 0.0 | A0A3B6JMH3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IHI9 | 0.0 | A0A453IHI9_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7W9H9 | 0.0 | R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15 | ||||
STRING | Traes_4DL_4C78C56A4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8071 | 36 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-128 | C3H family protein |
Publications ? help Back to Top | |||
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