PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_4798D0BBD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 234aa    MW: 25708.8 Da    PI: 6.571
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_4798D0BBD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1962115356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++++eq + Le  F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k
  Traes_4DL_4798D0BBD.1  62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 115
                            45689************************************************9 PP
2HD-ZIP_I/II112.13.5e-3662153293
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n+rLe+e  +L+e
  Traes_4DL_4798D0BBD.1  62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAELLRLKE 149
                            9**************************************************************************************9 PP

            HD-ZIP_I/II  90 elke 93 
                            +l+e
  Traes_4DL_4798D0BBD.1 150 RLAE 153
                            9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.69857117IPR001356Homeobox domain
SMARTSM003893.2E-1660121IPR001356Homeobox domain
SuperFamilySSF466899.39E-1761124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1662115IPR009057Homeodomain-like
CDDcd000861.91E-1462117No hitNo description
PfamPF000468.6E-1762115IPR001356Homeobox domain
PRINTSPR000315.2E-68897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000315.2E-697113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSPEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA AGEGAGGDDA  60
AKKRRLSDEQ AQFLEMSFRK ERKLETPRKV QLAAELGLDT KQVAVWFQNR RARYKSKLIE  120
EEFSKLRAAH DAVVVHNCRL EAELLRLKER LAETEEEKNK AMAAAAATAG GGGGSSPSSS  180
SFSTVTAMVG GQQFGMEEVE TDLTYMSEYA YTNYMMDLAA GGYLGVGGVY DQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14264RRRARQAAAGEGAGGDDAAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652950.0AK365295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033D08.
GenBankAK3702530.0AK370253.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107J20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157992.11e-171homeobox-leucine zipper protein HOX12-like
SwissprotA2XDK58e-82HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
SwissprotQ10QF26e-82HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLA0A3B6JKQ11e-169A0A3B6JKQ1_WHEAT; Uncharacterized protein
TrEMBLA0A453IQZ31e-169A0A453IQZ3_AEGTS; Uncharacterized protein
STRINGTraes_4DL_4798D0BBD.11e-170(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-28homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]