PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_4164D3F4C.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 304aa    MW: 32269.8 Da    PI: 6.4582
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_4164D3F4C.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-0954911954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                           Fe   n+yps  ++  LA+++gL+ +qV++WF N R +
  Traes_4DL_4164D3F4C.3 54 FEHflNPYPSDVDKHILARQTGLSRSQVSNWFINARVR 91
                           665569******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.3413295IPR001356Homeobox domain
SMARTSM003895.9E-93599IPR001356Homeobox domain
CDDcd000862.81E-133596No hitNo description
SuperFamilySSF466893.42E-1836102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-2838101IPR009057Homeodomain-like
PfamPF059202.9E-185291IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTRGDTPRLK VLDQCIRQQK AMHQNGGMMM DSHPWRPQRG LPERAVTILR AWLFEHFLNP  60
YPSDVDKHIL ARQTGLSRSQ VSNWFINARV RLWKPMVEEM YVEEMKGEQQ DDGGLINPNN  120
PSSSGSHASD AQGQQGAAAA DEGERVGADD RKPTRAQLHV GHDAGSLASV VNIAGVPARM  180
ESFGVMDAAH HLDFDAYGGQ GQGGFGGGAG GVSLTLGLQQ HDTHGGVGGV NIAFGAPSSA  240
QHGAGGFLFP GEQMDGVGLH PSGGHGQNIQ FGMDGAAEGS SHGVQDQHYR GMSAGFHLLR  300
DLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A6e-174199159Homeobox protein Meis2
5bng_B6e-174199159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678000.0AK367800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062I16.
GenBankAK3721850.0AK372185.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184600.10.0homeobox protein BEL1 homolog
RefseqXP_020184605.10.0homeobox protein BEL1 homolog
RefseqXP_020184610.10.0homeobox protein BEL1 homolog
RefseqXP_020184619.10.0homeobox protein BEL1 homolog
SwissprotQ388972e-66BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A3B6JRG40.0A0A3B6JRG4_WHEAT; Uncharacterized protein
STRINGTraes_4DL_4164D3F4C.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.13e-62TALE family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]