PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_3BEA40EE1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 133aa    MW: 14824.5 Da    PI: 8.1079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_3BEA40EE1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000932848323
                           ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                           C +Cg+ F ++  +  H++ H
  Traes_4DL_3BEA40EE1.1 28 CVYCGRNFYNSQAFGGHQNAH 48
                           *************99999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.58E-71570No hitNo description
PROSITE profilePS5015710.9492653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEANEEQCEL TLHSSPSSVR EPPGLFLCVY CGRNFYNSQA FGGHQNAHKE ERRLARRRRE  60
MATTRRVHAA SPLSPAPSSH EAATARLSAE DHATGLFAAA KKARMEIQLE RGRSFPEYDD  120
ARTGDGLDLS LRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15158RRLARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162034.19e-94uncharacterized protein LOC109747369
TrEMBLA0A3B6JP662e-92A0A3B6JP66_WHEAT; Uncharacterized protein
TrEMBLA0A453ISV82e-92A0A453ISV8_AEGTS; Uncharacterized protein
TrEMBLM8CE822e-92M8CE82_AEGTA; Zinc finger protein 3
STRINGEMT214813e-93(Aegilops tauschii)
STRINGTraes_4DL_3BEA40EE1.13e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-09zinc finger protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]