PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_2B0A44F87.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9487.18 Da PI: 7.5277 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 2 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W+ E e++ +a + +G + W+++a+ +g g+t+ +++ ++ Traes_4DL_2B0A44F87.1 2 AWSDAENERFERALATYGRDtagLWERVAAAVGGGKTADDVRRHY 46 7*****************99************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00249 | 4.3E-8 | 1 | 46 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 10.421 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0041 | 2 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 2 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-6 | 2 | 46 | No hit | No description |
SuperFamily | SSF46689 | 8.97E-10 | 3 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MAWSDAENER FERALATYGR DTAGLWERVA AAVGGGKTAD DVRRHYDLLT QDIGDIESGR 60 YGYPNGGANG NTNRNNGRNR TNRPQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-17 | 3 | 79 | 11 | 89 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156392.1 | 2e-56 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 7e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A3B6JM48 | 4e-55 | A0A3B6JM48_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IHJ0 | 4e-55 | A0A453IHJ0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_2B0A44F87.1 | 7e-56 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-19 | RAD-like 6 |
Publications ? help Back to Top | |||
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