PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_21C202E37.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 345aa MW: 37894.5 Da PI: 5.1784 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.9 | 7.1e-34 | 64 | 163 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+ Traes_4DL_21C202E37.1 64 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHE 151 79*************************9977778***************************************8889*********** PP DUF573 86 qkifelskkiWg 97 q +fe+++ iW+ Traes_4DL_21C202E37.1 152 QAVFEIARNIWR 163 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-30 | 65 | 162 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MLPMVDDPSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSAGPP PASATATVGE 60 RRPLFQRLWT EEDEIVILRA FAEFTAQRGT AFASHQYDTE PFYEEMRRRL QLDFSKSQLA 120 EKLRRLKRKY RNCVERLRCS GNTFSFRSPH EQAVFEIARN IWRPSSDKHG RDPNAADSED 180 DATITATNAA ANGDAKSPSS SKAHRRGRRR RTADLAADAS EAPQPYTSGP MPVKTEDSLP 240 AFFPHVSMDG AEPVVAPVVN TESSVLTPLF KEMVRAMLGI GGCPSPLGLG AKVPEQPSAI 300 LGIPMDGEKW RQQRILELEV YLRRIDLLQD EVKSALEELK STPPT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250922 | 0.0 | AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169680.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020169681.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A3B6HVY5 | 0.0 | A0A3B6HVY5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QZV1 | 0.0 | A0A446QZV1_TRITD; Uncharacterized protein | ||||
STRING | Traes_4DL_21C202E37.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-41 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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