PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_1C0F38900.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 350aa    MW: 37604.2 Da    PI: 4.5597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_1C0F38900.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11181223754
                            HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  +++Y+++L
  Traes_4DL_1C0F38900.1 181 MAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDTIDYVNEL 223
                            89*********************7.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.888174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16177250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9180223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15181244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-4187228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDQLDEQSFL DELMSLRREE APVPAPAPWQ AYPASGMMTT SDLLFYASEG AGEASSGTDL  60
VGPFLQQPMA PPPAAPPHRP HEEFNFDCLS EVCNPYRSCV GIVPGPGAGQ ALAQDPLHDA  120
MAEDDLSGGN LHRGGGASSS PVPFVFGAGG AGESSEMTRG LFSGAHPRSK LNGGTTSKNL  180
MAERRRRKRL NDRLSMLRSI VPKITKMDRT SILGDTIDYV NELTERIKTL EEEIGATPEE  240
LNLLNTRKNF SSGSSEEMPT RNSTKFVIEK QGDGEMRIDI CCATSPGVLI STVSALEVLG  300
LEIEQCVVSC FGDFAMQASC SQEEGRSRVT STDEIKQALF TSAGYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674520.0AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150249.10.0transcription factor bHLH93-like
SwissprotQ9LSL14e-55BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3B6JPI40.0A0A3B6JPI4_WHEAT; Uncharacterized protein
TrEMBLA0A453J3G00.0A0A453J3G0_AEGTS; Uncharacterized protein
STRINGTraes_4DL_1C0F38900.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-57beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]