PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_0A32CD500.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 85aa    MW: 9619.86 Da    PI: 7.3653
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_0A32CD500.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH192.6e-0612521554
                           HHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                           +iN+ +++++ +lP++s + ++ + s +  L++++ YIksL
  Traes_4DL_0A32CD500.1 12 EINELISKIQAVLPESSrRRSASRSSASKLLKETCGYIKSL 52
                           7**************6647777779999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.683152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-81171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-81176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSRRGRITD EEINELISKI QAVLPESSRR RSASRSSASK LLKETCGYIK SLHQEVDDLS  60
DRLSELMSTL DETSPQAEII RSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601313e-92AK360131.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187115.11e-52transcription factor ILI3
SwissprotA2XD157e-34ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R477e-34ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A3B6JPR33e-51A0A3B6JPR3_WHEAT; Uncharacterized protein
TrEMBLA0A453IW275e-51A0A453IW27_AEGTS; Uncharacterized protein
TrEMBLN1QV453e-51N1QV45_AEGTA; Uncharacterized protein
STRINGEMT139854e-52(Aegilops tauschii)
STRINGTraes_4DL_0A32CD500.14e-52(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.16e-24bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]