PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_0075CCAD9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 37316.9 Da PI: 5.1147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 179 | 221 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+++L Traes_4DL_0075CCAD9.1 179 MAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDTIDYVNEL 221 89*********************7.....6***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.888 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 175 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-13 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 178 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 179 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.43E-5 | 185 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDQLDEQSFL DELMSLRREE APSPAPWQAY PGSGMMTTSD LLFYGGEGTT EASSGMDFAG 60 PFQQPMAPPP ATSPHRPHEK FNFDCLSEVC NPYGSCVGGV PKPGVVHAAG QAYALQDAMA 120 QNGTSGGKLH HGGGRSSSSP APFVFAGVAG ESSEMTRGAF SGAHARSKLN GGTTSKNLMA 180 ERRRRKRLND RLSMLRSIVP KITKMDRTSI LGDTIDYVNE LTERIQTLEE EIGATPEDLN 240 LLNTTKNFSS GSSEEMPMRN STKFVIEKQG DGGTRIDICC ATSPGVLIST VSALEVLGLE 300 IEQCVVSCFG DFAMQASCSQ EEGRSRVTRT DEIKQALFTS AGYGGRCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | GGKLHHGGG |
2 | 180 | 187 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367452 | 0.0 | AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150230.1 | 0.0 | transcription factor bHLH61-like | ||||
Swissprot | Q9LSL1 | 1e-55 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A3B6JQS6 | 0.0 | A0A3B6JQS6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453J2Z3 | 0.0 | A0A453J2Z3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_0075CCAD9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 8e-58 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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