PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_F83CB32DD.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 290aa MW: 32303.8 Da PI: 5.5635

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_F83CB32DD.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ l+++++ +G g+W++ ar g++Rt+k+c++rw++yl Traes_4BS_F83CB32DD.1 25 RGPWTVDEDLTLINYIADHGEGRWNALARAAGLRRTGKSCRLRWLNYL 72 89********************************************97 PP
2	Myb_DNA-binding	55.7	1.1e-17	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Traes_4BS_F83CB32DD.1 78 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.404	20	72	IPR017930	Myb domain
SuperFamily	SSF46689	3.15E-30	23	119	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	24	74	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-16	25	72	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-22	26	79	IPR009057	Homeodomain-like
CDD	cd00167	2.69E-11	27	72	No hit	No description
PROSITE profile	PS51294	23.86	73	127	IPR017930	Myb domain
SMART	SM00717	1.2E-15	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-16	78	121	IPR001005	SANT/Myb domain
CDD	cd00167	4.77E-12	80	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-24	80	126	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDMVLQSRSS NSMAAEPEEE AELRRGPWTV DEDLTLINYI ADHGEGRWNA LARAAGLRRT 60 GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHSRWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKHAKQL NCDVGSATFK DAMRYLWMPH LVERIHAAAA TAGGDPTMGD TSCASGVTSM 180 AATATTYPDN NSPASAVTTS RSASSGSFTS ELCGEEKNLQ VHGSGEKTTS GGDWMQDADQ 240 EFWAMHMQIQ PDDGGLFHVD HELSGWVQGF SDVGVSADNL WSLEDIWKMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-25	22	119	24	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009018	0.0	BT009018.1 Triticum aestivum clone wdk3c.pk006.n12:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155473.1	0.0	transcription factor MYB108-like
Swissprot	Q2QZJ8	1e-123	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	W5EEJ8	0.0	W5EEJ8_WHEAT; MYB transcription factor 82
STRING	Traes_4BS_F83CB32DD.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-67	myb domain protein 78

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]