PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_E0FC47132.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 324aa    MW: 36293.5 Da    PI: 6.3011
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_E0FC47132.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.39.2e-072492752955
                            HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  29 ereeLAkklgLterqVkvWFqNrRake 55 
                            e++ LA+++gL+ +q+ +WF N+R ++
  Traes_4BS_E0FC47132.1 249 EKAALAQSTGLDAKQINNWFINQRKRH 275
                            6789********************885 PP
2ELK33.49.5e-12195216122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK +Ll+KYsgyL+sL+  +s
  Traes_4BS_E0FC47132.1 195 ELKSHLLNKYSGYLSSLWRDLS 216
                            9*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.2E-1960104IPR005540KNOX1
PfamPF037902.1E-2061100IPR005540KNOX1
SMARTSM012563.2E-27109160IPR005541KNOX2
PfamPF037913.4E-23113159IPR005541KNOX2
PfamPF037895.0E-9195216IPR005539ELK domain
PROSITE profilePS512139.655195215IPR005539ELK domain
SMARTSM011881.5E-6195216IPR005539ELK domain
PROSITE profilePS500719.831215278IPR001356Homeobox domain
SuperFamilySSF466896.42E-14216293IPR009057Homeodomain-like
SMARTSM003891.3E-4217282IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-19220279IPR009057Homeodomain-like
CDDcd000864.03E-8224278No hitNo description
PfamPF059201.7E-9249274IPR008422Homeobox KN domain
PROSITE patternPS000270253276IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDQFPLLPSG SKANTSTPLY LTLDNTTSGP STSPVPEPEP EPAPAPPEPS RHSYHDRGTD  60
TVKAKIMSHP LYPALLTAFI ECQKVGAPPE IVGRLSALAG DLDSDPGDRH QDPVPDPELD  120
EFMETYCDVL VRYKQELTRP IQEADQFFRA MEAQMESFTL DDHSYEGGGS SEDEQEAGDV  180
GGLPEITSHC AEDKELKSHL LNKYSGYLSS LWRDLSKKKK KGKLPRDARQ KLLHWWQLHY  240
RCMPRQELEK AALAQSTGLD AKQINNWFIN QRKRHWKPTP PAMEYMPQHH HHHPYGGASS  300
SSPAPFRTTD GHYFAGGSAY PRGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5440469e-99AF544046.1 Hordeum vulgare knotted 2 (kn2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175441.10.0homeobox protein knotted-1-like 4
SwissprotQ75LX71e-149KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A3B6IKK60.0A0A3B6IKK6_WHEAT; Uncharacterized protein
STRINGTraes_4BS_E0FC47132.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-73KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]