PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_E01AAE6DE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 273aa    MW: 29827 Da    PI: 8.5114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_E01AAE6DE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-053886254
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           +  + erE+  Rd++N+ f eL ++l ++     +   Ka++L  A + +++L
  Traes_4BS_E01AAE6DE.1 38 KNHKAEREKLKRDQLNDLFVELSSMLDHD----RQNRGKATVLGDAARVLRDL 86
                           677899********************997....46677888888888888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-834106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1034100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.001283491No hitNo description
PROSITE profilePS5088810.483686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-44292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVADAQSSDS MAGRSSYAAE KHVDRCLDKR AQEKAPKKNH KAEREKLKRD QLNDLFVELS  60
SMLDHDRQNR GKATVLGDAA RVLRDLTTQV ESLRKEQSTL LTERQYVGSE KTELQDENTT  120
LRAQVIELQN ELRARIGNSS LNLSSLVVSH PIGSSCTTNL ATHPTPHDTW SNVSNLSTMS  180
MVAPTNTPSP LQNQQHHSVA SGQVALRPQE LQLFPGTSAS SDRECSRHRS NPATSSLADS  240
LPGQLRLSLP PTSQEESSGG GGAPGNRKER KTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191318.11e-179transcription factor bHLH47-like
RefseqXP_020191373.11e-179transcription factor bHLH47-like
RefseqXP_020191427.11e-179transcription factor bHLH47-like
TrEMBLA0A3B6IP440.0A0A3B6IP44_WHEAT; Uncharacterized protein
STRINGTraes_4BS_E01AAE6DE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129592124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.39e-31bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]