PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_E01AAE6DE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 29827 Da PI: 8.5114 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.4 | 1.7e-05 | 38 | 86 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f eL ++l ++ + Ka++L A + +++L Traes_4BS_E01AAE6DE.1 38 KNHKAEREKLKRDQLNDLFVELSSMLDHD----RQNRGKATVLGDAARVLRDL 86 677899********************997....46677888888888888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 34 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-10 | 34 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00128 | 34 | 91 | No hit | No description |
PROSITE profile | PS50888 | 10.48 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.9E-4 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MVADAQSSDS MAGRSSYAAE KHVDRCLDKR AQEKAPKKNH KAEREKLKRD QLNDLFVELS 60 SMLDHDRQNR GKATVLGDAA RVLRDLTTQV ESLRKEQSTL LTERQYVGSE KTELQDENTT 120 LRAQVIELQN ELRARIGNSS LNLSSLVVSH PIGSSCTTNL ATHPTPHDTW SNVSNLSTMS 180 MVAPTNTPSP LQNQQHHSVA SGQVALRPQE LQLFPGTSAS SDRECSRHRS NPATSSLADS 240 LPGQLRLSLP PTSQEESSGG GGAPGNRKER KTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191318.1 | 1e-179 | transcription factor bHLH47-like | ||||
Refseq | XP_020191373.1 | 1e-179 | transcription factor bHLH47-like | ||||
Refseq | XP_020191427.1 | 1e-179 | transcription factor bHLH47-like | ||||
TrEMBL | A0A3B6IP44 | 0.0 | A0A3B6IP44_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_E01AAE6DE.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12959 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 9e-31 | bHLH family protein |
Publications ? help Back to Top | |||
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