PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_DC076554D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 354aa MW: 38247.8 Da PI: 8.004 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 155 | 4.5e-48 | 107 | 261 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k ai e + + +++s+c e++sss s+ ++ Traes_4BS_DC076554D.1 107 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKGAIREVMTD--EASSDCeEDGSSSLSVVDGKH 192 589**************************************************************..666669766666655553333 PP TCP 88 g...................kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 + +aa+ a+ k+k+++k a+++ ++kesr kar+rarertrek+r+++++ Traes_4BS_DC076554D.1 193 KppgteaeggdhgegkkqvpRAARRAPaKPKPQRKLASAHPIPDKESRTKARERARERTREKNRMRWVT 261 356777788888888999995555555499999999999999999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-44 | 109 | 257 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.527 | 110 | 168 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.733 | 237 | 254 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MFPFYDSPSP MDLPLYQQLQ ISPPSPKAPD HQSLLYYHSS PAFAADSFHH SYLCAGAATP 60 TPPAAEIDNQ SPPELLLMDQ APAPRADGVG TAQGLHGGGG LDSAAAAAAR KDRHSKICTA 120 GGMRDRRMRL SLDVARKFFA LQDMLGFDKA SKTVQWLLNT SKGAIREVMT DEASSDCEED 180 GSSSLSVVDG KHKPPGTEAE GGDHGEGKKQ VPRAARRAPA KPKPQRKLAS AHPIPDKESR 240 TKARERARER TREKNRMRWV TLASTINIEP AATGMAAARA DEFVTRPNNL ISRSSSMNTA 300 RAELEEGCSS SMPSEAIMAG FGNGGYGSSG NYYQYQLEQQ WELGGVVFPN SQPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF904738 | 0.0 | JF904738.1 Hordeum vulgare clone a2 tcp transcription factor (INT-C) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185348.1 | 0.0 | transcription factor TEOSINTE BRANCHED 1-like | ||||
Swissprot | Q8LN68 | 1e-110 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A3B6ILB1 | 0.0 | A0A3B6ILB1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RRJ8 | 0.0 | A0A446RRJ8_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_DC076554D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-24 | TCP domain protein 12 |