PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_C74B4B7BA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 809aa    MW: 87870 Da    PI: 7.12
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_C74B4B7BA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.51.8e-16116170256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rkR ++ + q++eLe++F+++++p+++ r  L+kk+ ++  +Vk+WFqNrR  +k
  Traes_4BS_C74B4B7BA.1 116 RKRGRHANRQIQELEAMFQQCPHPDENLRIALSKKVCMDPLRVKFWFQNRRNAKK 170
                            79999**********************************************8777 PP
2START94.42.3e-303055255205
                            HHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEE CS
                  START   5 eaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetlakaetle 83 
                            +a++el+ +++ +ep+W   +   e ++ + ++ +  ++        ++    r++g+v ++ a+lv++++d + +W+et++  ++++
  Traes_4BS_C74B4B7BA.1 305 AALRELMMLMKQGEPMWQPAAlggEVLDHQLYRATTLPGLLelpppgFTANGTRDTGLVMCTGADLVRIFMDEN-CWSETFP--DIVA 389
                            78899999999999999999999988888888888888666889888899999*********************.*******..8888 PP

                            EECTT.........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEE CS
                  START  84 vissg.........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepk 157
                             +s +         g + lm+a l +lsp v+  d+ fvR+++  ++g+w++vdvS+d +   +     +     +++lpSg+li+++
  Traes_4BS_C74B4B7BA.1 390 SVSADnighgcicqGGVILMKAGLRVLSPGVSsCDVKFVRQCQMIEQGVWAVVDVSLDANGTSELrawnTGLPGACRVLPSGCLIKDM 477
                            888888889899999999***********9999*************************9999988887544446679*********** PP

                            CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                  START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                             ng++kv ++ ++++++   ++ l++l++sg+ + a++w+  lqr ce
  Traes_4BS_C74B4B7BA.1 478 NNGYCKVAMIVNAEYDKGFMRSPLHPLLSSGHTFSARRWLTSLQRRCE 525
                            *********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-15108173IPR009057Homeodomain-like
PROSITE profilePS5007114.657112172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-18112179IPR009057Homeodomain-like
SMARTSM003893.5E-14114176IPR001356Homeobox domain
CDDcd000863.40E-14116173No hitNo description
PfamPF000466.6E-14116170IPR001356Homeobox domain
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PROSITE profilePS5084824.358292529IPR002913START domain
SMARTSM002345.8E-5301526IPR002913START domain
PfamPF018521.6E-23305525IPR002913START domain
SuperFamilySSF559615.01E-17350525No hitNo description
SuperFamilySSF559619.07E-7545735No hitNo description
CDDcd078120.00269617678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MVASLPSLLC WKHCLGVKSG VGSICLVVVW WIWSGQRLGE HGALVVSPFG VDRRSTVAMV  60
GEWQPQNGQV HDEIDLSIPV DDKDLIWSNT GTMNDDEDVA TADEGITDAG SASHMRKRGR  120
HANRQIQELE AMFQQCPHPD ENLRIALSKK VCMDPLRVKF WFQNRRNAKK NQNERQQNMV  180
LRTENIMLEE ENRAMKAAIL KKTCPTCKGP MVFFRPLTPE LRRLHMENAR LKAELLHRTA  240
YLHGVSAGTA GSSRILCDLN VDPVMPLPLR QDDLMADTMG HCAPGGCASA AGGPEHAALE  300
RHVLAALREL MMLMKQGEPM WQPAALGGEV LDHQLYRATT LPGLLELPPP GFTANGTRDT  360
GLVMCTGADL VRIFMDENCW SETFPDIVAS VSADNIGHGC ICQGGVILMK AGLRVLSPGV  420
SSCDVKFVRQ CQMIEQGVWA VVDVSLDANG TSELRAWNTG LPGACRVLPS GCLIKDMNNG  480
YCKVAMIVNA EYDKGFMRSP LHPLLSSGHT FSARRWLTSL QRRCEFLAQR LSPAYGISRA  540
GGAITPEGRN NVLELARRMT ESFYVAISAP RGEAWRKVAD SRGSCGVGGE SFQLAMHVVT  600
PLAAPGEQAA GPVLCATTTV WLPEIPPQRV FDYICDVERR GEWDVLAEGA RVQEDASLAT  660
AQFPLTGVSI LRPTGRGRGG SSCNKKLILQ QACGDAPCMV VAYAPIDTAD LKDVMHGGRR  720
ASLSLLPSGF SILPDGVGDI QTDPLDANPS AVDPIDHQRS CGSLVSVLRQ THLIGGNLTA  780
QTVDNFGNNV SGSIMKIKDA VHAKRVMTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6898123e-45KJ689812.1 Triticum turgidum subsp. durum ethylene response factor 1 (ERF1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183090.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A3B6IP780.0A0A3B6IP78_WHEAT; Uncharacterized protein
STRINGTraes_4BS_C74B4B7BA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4912422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-112homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]