PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_ACD70539F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 269aa    MW: 28710.5 Da    PI: 6.5107
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_ACD70539F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.5e-16165201135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nCg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Traes_4BS_ACD70539F.1 165 CQNCGVSSrlTPAMRRGPAGPRTLCNACGLMWANKGT 201
                            **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-83267IPR010399Tify domain
PROSITE profilePS5132015.0683267IPR010399Tify domain
PfamPF062003.3E-113465IPR010399Tify domain
PROSITE profilePS5101713.35494136IPR010402CCT domain
PfamPF062031.0E-1594134IPR010402CCT domain
SMARTSM004019.4E-11159213IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-11163214No hitNo description
Gene3DG3DSA:3.30.50.104.6E-14164203IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.3E-14165201IPR000679Zinc finger, GATA-type
PROSITE patternPS003440165192IPR000679Zinc finger, GATA-type
CDDcd002022.14E-15165219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAAEPAADGQ DPPLADAASG DDDAAAAADA LLSAASEQLT LVYQGEVYVF DPVPPQKVQA  60
ALLVLGGCEV PPGLVSMAGP TAYAEKSTTV AAKRVASLMR FREKRKERCF DKKIRYGVRK  120
EVAQKMKRRK GQFAGRADFG DAASSSAACV SAVDGEDDHF RESHCQNCGV SSRLTPAMRR  180
GPAGPRTLCN ACGLMWANKG TLRSPLNAPK MTVQHPVNPS KMESVDDDKA IVCAERNHTA  240
VKMDSEMSPE QEQKPELRPA TEGDTMADS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767000.0AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187640.11e-158GATA transcription factor 19-like
SwissprotQ0DNU11e-136GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A3B6IPG20.0A0A3B6IPG2_WHEAT; Uncharacterized protein
TrEMBLA0A446RTI90.0A0A446RTI9_TRITD; Uncharacterized protein
STRINGTraes_4BS_ACD70539F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-52ZIM-LIKE 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]