PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_A05D3DC53.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 679aa MW: 72316.9 Da PI: 6.404 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 411.7 | 6.8e-126 | 308 | 672 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfse 86 +lLl+cAe v+s+dl +aq++L ++ ela+p g+++qR+aayf+eA++arl +s+ +ly+ lp +++ + s+++aa+++f+ Traes_4BS_A05D3DC53.1 308 LTLLLQCAESVNSDDLDEAQRALLEIAELATPFGTSTQRVAAYFAEAMSARLISSCLGLYAPLPNASSPAASrlvNSRVAAAFQVFNG 395 579************************************************************77666655568788899999***** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174 +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s e+le+tg+rL++fA++lg+ Traes_4BS_A05D3DC53.1 396 ISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFAHTLGL 479 ***************************************************************....********************* PP GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 pfef + va + +l++e+L v++ +Ea+aV++ + h+l+d +++ ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea Traes_4BS_A05D3DC53.1 480 PFEFYP-VAGKAGNLDPEKLGVDTrrREAVAVHWLH--HSLYDVTGNDSN----TLNLIQRLAPKVVTMVEQDLSH-SGSFLARFVEA 559 ******.799**********999888*********9..999988888888....**********************.899******** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 ++yysalfdsl+a+++++s+er++vE++ll+rei+nv+a g +r+ + + +++Wre+l ++GF++++l +aa+qa+lll +++sdg Traes_4BS_A05D3DC53.1 560 IHYYSALFDSLDASYSEDSSERHVVEQQLLAREIRNVLAVGGPARTGDIK-FGNWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDG 646 ********************************************999987.************************************* PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 y++ ee+g+l lgWkd L+++SaWr Traes_4BS_A05D3DC53.1 647 YTLVEENGTLKLGWKDLCLLTASAWR 672 *************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.376 | 281 | 652 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-123 | 308 | 672 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MGSSSLLLFP SSSSSGPNHS SYSHAHAAAS ASHSALLPPL PSPSPSDLFL YLDQLDHQEG 60 AAAMVRKRPA PDVDLPPPRR HVTGDLSDVT AATGGAAPPQ QLPPAVAGSA QLPALPMQLP 120 AFGSHLQAPV LAMDVVVAPQ VATEVNVNNN STAWVDGIIR DIIGSSGAAV SVAQLIHNVR 180 EIIHPCNPGL ASLLELRLRS LLASDLVQHQ PPPPPPLHHP PSLLPGAGGN TMLSAPPVPA 240 LPPPPPPDKR RREEEQPNQP PQSPKPPPSA EETAAAAAAA AAAASAALKE RKEEQRRRQR 300 DEEGLHLLTL LLQCAESVNS DDLDEAQRAL LEIAELATPF GTSTQRVAAY FAEAMSARLI 360 SSCLGLYAPL PNASSPAASR LVNSRVAAAF QVFNGISPFV KFSHFTANQA IQEAFEREDR 420 VHIVDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFAHTLGLP 480 FEFYPVAGKA GNLDPEKLGV DTRRREAVAV HWLHHSLYDV TGNDSNTLNL IQRLAPKVVT 540 MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSSE RHVVEQQLLA REIRNVLAVG 600 GPARTGDIKF GNWREKLAQS GFRAASLAGS AAAQASLLLG MFPSDGYTLV EENGTLKLGW 660 KDLCLLTASA WRPVQALGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 291 | 673 | 3 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366346 | 0.0 | AK366346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042C03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178107.1 | 0.0 | protein SCARECROW 2-like | ||||
Swissprot | A2ZHL0 | 0.0 | SCR2_ORYSI; Protein SCARECROW 2 | ||||
Swissprot | Q2QYF3 | 0.0 | SCR2_ORYSJ; Protein SCARECROW 2 | ||||
TrEMBL | A0A3B6IRK1 | 0.0 | A0A3B6IRK1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_A05D3DC53.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |