PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_9BFCC52AD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 312aa    MW: 33902.4 Da    PI: 4.5677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_9BFCC52AD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-112392791055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR++iN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  Traes_4BS_9BFCC52AD.1 239 RKRREKINERLKVLQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 279
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-15229295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.332229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-14234292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.78E-13238283No hitNo description
PfamPF000101.9E-8239279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESGGVIAEA GWDSLGLTSQ AEESEMMEQL LGTFPSNGEE EHQELPWSVQ ATHAYYAHCN  60
GSSNAYSSAS SNSVGSLILD VPSDYGGFYL GDSNGIGSCT AALDLNMVHE QGAAQFMDAI  120
FNPSYGNGDS SCDNLGDSSM NLLDSIDTSN KRKHQDQGKI ADQTSGRKYS RKADSKRTKK  180
AMQCEGDDGT TADTSKQSLS CCTSEIDSNA FQEPPVASKP KGKAQAGRQT TDPQSLYARK  240
RREKINERLK VLQNLVPNGT KVDISTMLEE AVEYVKFLQL QIKLLSSDEM WMYAPIAYNG  300
MNIGIDLNLS QH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188753.10.0transcription factor bHLH54-like
TrEMBLA0A3B6IL420.0A0A3B6IL42_WHEAT; Uncharacterized protein
STRINGTraes_4BS_9BFCC52AD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-47bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]