PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_96AE357C6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 347aa MW: 38068.7 Da PI: 5.182 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 107.9 | 7.2e-34 | 66 | 165 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d++ fye +++++++++sksql eK+rrLK+K++++v++ + sg+ +sf+++h+ Traes_4BS_96AE357C6.1 66 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTEPFYEEMRRRLQLDFSKSQLAEKLRRLKRKYRNCVERlRCSGNTFSFRSPHE 153 79*************************9977778***************************************8889*********** PP DUF573 86 qkifelskkiWg 97 q +fe+++ iW+ Traes_4BS_96AE357C6.1 154 QAVFEIARNIWR 165 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-30 | 67 | 164 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MLPMVDDPSA AGAAASSSFP DADAYGNGDS EDIDFPVDPI PNPPFSSAPV AAPASATATV 60 GERRPLFQRL WTEEDEIVIL RAFAEFTAQR GTAFASHQYD TEPFYEEMRR RLQLDFSKSQ 120 LAEKLRRLKR KYRNCVERLR CSGNTFSFRS PHEQAVFEIA RNIWRPSSDK HGRDPNAADS 180 EDDATITATN AAANGDAKSP SSSKAHRRGR RRRTADLAAD ASEAPQPYTS GPMPVKTEDS 240 LPAFFPHVSM DGAEPVVAPV VNTESSVLTP LFKEMVRAML GIGGCPSPLG LGAKVPEQPS 300 AILGIPMEGE KWRQQRILEL EVYLRRIDLL QDEVKSALEE LKSTPPS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250922 | 0.0 | AK250922.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98d18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169680.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020169681.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A3B6IS84 | 0.0 | A0A3B6IS84_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446S2G6 | 0.0 | A0A446S2G6_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_96AE357C6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-43 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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