PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_6AFF9C78A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 813aa MW: 88392.2 Da PI: 6.3936 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00067 | 617 | 655 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a k s + Lek+v+++ Lq Traes_4BS_6AFF9C78A.2 617 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 655 67799************66.....66888899******999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.4E-15 | 3 | 86 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.00292 | 598 | 655 | No hit | No description |
PROSITE profile | PS50888 | 10.588 | 604 | 654 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-5 | 617 | 660 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-5 | 617 | 667 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 813 aa Download sequence Send to blast |
MAEQVHVVGE GTVGRVAFTG SHQWIIHGTA DDHGLSSEVA SEMHYQFRAG IKTIAIIPVL 60 PRGVLQLGST GVQVMENTSF VMHAKKLCSQ LNQRSSMASS ASVKSTSNQS RPLHGASNIQ 120 AADNSFSQFP VIREQYRRSD SATASSSKSL NASLFEAAQQ NGLTGREHIV YGKPNDMFVQ 180 QASYCDNRLG SNTQSAEISS GLVPSSLASV EQQQMLMNTI GQLEFGSGTD LARSALLKSL 240 LYRNPFMHET SDMKLSHGRV GLPQGTAGHG SYGFLPGSAG VVSTTLCTSS QVSEQGSHSS 300 SGMLRQKQPP VSCNVPQSSE FTMKMVHQER RSSEGALPVS SQSDVQVSNC LNGMSQENLL 360 SRSGHMQKDQ NADRANDPRV AVSTQGVKNM DGCMLPAMPS ETTHSLLLQP TWDNDLFDIF 420 GSEFHQLGHN VDANLVSSCD AKSHSLDREA TEPSICLDSS SLFSSLDNDF PCSGIFSLTD 480 TDQLLDAVIS NVNPSSKQSS DDNASCKTAL TDIPNISHFG LEELKQCDSS GIPSTVIKNE 540 STQIVKQPYY FDKTEDGCLS QNNGAQKSQI RLWIENGQNM KCESASASNS KGLDTQSKSN 600 RKRSRPGESS KARPKDRQLI QDRIKELREM VPNGAKQCSI DALLEKTVKH MLFLQSVTKH 660 ADKLKDSTES KILGSENGPV WKDYFEGGAT WAFDVGSQSM TCPIIVEDLD RPRQMLVEMI 720 CEDRGIFLEI ADFIKGLGLT ILRGVMEARK SKIWARFTVE ANRDVTRMEI FLSLVRLLEP 780 NCDGSGAAEN PNSVNMPLGL VRQPVIPATG GIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369500 | 0.0 | AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178282.1 | 0.0 | transcription factor LHW-like isoform X1 | ||||
TrEMBL | A0A3B6IR86 | 0.0 | A0A3B6IR86_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RXS5 | 0.0 | A0A446RXS5_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_6AFF9C78A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2654 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 2e-51 | conserved peptide upstream open reading frame 7 |
Publications ? help Back to Top | |||
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