PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_6AFF9C78A.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 813aa    MW: 88392.2 Da    PI: 6.3936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_6AFF9C78A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000676176551355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R+ i +++ eLre++P+ a     k  s  + Lek+v+++  Lq
  Traes_4BS_6AFF9C78A.2 617 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 655
                            67799************66.....66888899******999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-15386IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00292598655No hitNo description
PROSITE profilePS5088810.588604654IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-5617660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-5617667IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MAEQVHVVGE GTVGRVAFTG SHQWIIHGTA DDHGLSSEVA SEMHYQFRAG IKTIAIIPVL  60
PRGVLQLGST GVQVMENTSF VMHAKKLCSQ LNQRSSMASS ASVKSTSNQS RPLHGASNIQ  120
AADNSFSQFP VIREQYRRSD SATASSSKSL NASLFEAAQQ NGLTGREHIV YGKPNDMFVQ  180
QASYCDNRLG SNTQSAEISS GLVPSSLASV EQQQMLMNTI GQLEFGSGTD LARSALLKSL  240
LYRNPFMHET SDMKLSHGRV GLPQGTAGHG SYGFLPGSAG VVSTTLCTSS QVSEQGSHSS  300
SGMLRQKQPP VSCNVPQSSE FTMKMVHQER RSSEGALPVS SQSDVQVSNC LNGMSQENLL  360
SRSGHMQKDQ NADRANDPRV AVSTQGVKNM DGCMLPAMPS ETTHSLLLQP TWDNDLFDIF  420
GSEFHQLGHN VDANLVSSCD AKSHSLDREA TEPSICLDSS SLFSSLDNDF PCSGIFSLTD  480
TDQLLDAVIS NVNPSSKQSS DDNASCKTAL TDIPNISHFG LEELKQCDSS GIPSTVIKNE  540
STQIVKQPYY FDKTEDGCLS QNNGAQKSQI RLWIENGQNM KCESASASNS KGLDTQSKSN  600
RKRSRPGESS KARPKDRQLI QDRIKELREM VPNGAKQCSI DALLEKTVKH MLFLQSVTKH  660
ADKLKDSTES KILGSENGPV WKDYFEGGAT WAFDVGSQSM TCPIIVEDLD RPRQMLVEMI  720
CEDRGIFLEI ADFIKGLGLT ILRGVMEARK SKIWARFTVE ANRDVTRMEI FLSLVRLLEP  780
NCDGSGAAEN PNSVNMPLGL VRQPVIPATG GIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178282.10.0transcription factor LHW-like isoform X1
TrEMBLA0A3B6IR860.0A0A3B6IR86_WHEAT; Uncharacterized protein
TrEMBLA0A446RXS50.0A0A446RXS5_TRITD; Uncharacterized protein
STRINGTraes_4BS_6AFF9C78A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-51conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]