PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_5D04C29FF.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 540aa MW: 61750.3 Da PI: 6.2649 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 34 | 111 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +++p +f++++ g+ +++++le+++g s+++ + k++++ vl++GW Fvk +L+ D vvF+++g+s+f v vf Traes_4BS_5D04C29FF.2 34 QEMIVPDEFLRRFRGE--IPREIKLETRNGHSYTIGV--AKYPDKLVLQAGWGLFVKTYDLRMDDCVVFRYKGNSQF--GVIVF 111 46899********776..6779***************..**********************************9999..55555 PP | |||||||
2 | B3 | 49.9 | 5.9e-16 | 361 | 452 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f+ v+ + +v+ ++ l+++kk++++h g+ke+ + ++ g++W+v++ + +++ + +GW++Fvk+n++++gD+++F+l + Traes_4BS_5D04C29FF.2 361 FVAVMRRFNVTGTCTLTFSKKYVQTHVGDKERR--VC-LQRFGKRWDVQF--SSSREVKRIVSGWRKFVKDNDVETGDICIFELLKId 443 5566777789999*************7787664..66.557*********..6666667789*********************76443 PP SEE..EEEE CS B3 88 sefelvvkv 96 + ++ v++ Traes_4BS_5D04C29FF.2 444 EMCTMEVHI 452 544566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-18 | 19 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.898 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-6 | 23 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-17 | 23 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-11 | 35 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.70E-15 | 36 | 112 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 353 | 455 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 356 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.89E-18 | 359 | 453 | No hit | No description |
SMART | SM01019 | 4.4E-7 | 361 | 456 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-14 | 361 | 453 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.07 | 361 | 456 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MGCERCERRD ELDYCNLDDR EKYFLMFIVD DCGQEMIVPD EFLRRFRGEI PREIKLETRN 60 GHSYTIGVAK YPDKLVLQAG WGLFVKTYDL RMDDCVVFRY KGNSQFGVIV FDRFGREKAF 120 SVITDNAPPV QESHNRGTEN VDRSHGHSQP MEVQSPIATA NHSDGRPQPM RMQPPTENAN 180 PSHAHPQPMR MQPPTENLDD PVGFSRPMEM QPPTENVDHL FGHSQPMQMQ PSTEAVDHFA 240 QMQPSTEAVD HSNGHAQTMR MQPSSEVVDH SNDHAQTMQM QLFCRPTKLR QTKLQWDYSS 300 KGNKTATSPS DTPRDSLSSE HDIEGCASPR YTLTYNSSLN TVQKEEIEEK VKSIHKDNPI 360 FVAVMRRFNV TGTCTLTFSK KYVQTHVGDK ERRVCLQRFG KRWDVQFSSS REVKRIVSGW 420 RKFVKDNDVE TGDICIFELL KIDEMCTMEV HIIHAKDFDR PSQIGGWSVE GRCKEATTKT 480 VEPSHSRPQL VQMQLCNASV EDSYSLPQPM EMQSPSTERK IRVETVNSSP GNEGDSSMSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174612.1 | 0.0 | putative B3 domain-containing protein Os08g0325100 | ||||
TrEMBL | A0A446RU73 | 0.0 | A0A446RU73_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_5D04C29FF.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12482 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-14 | B3 family protein |
Publications ? help Back to Top | |||
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